2qsd: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-{{Seed}}
-[[Image:2qsd.png|left|200px]]
-<!--
+==Crystal structure of a protein Il1583 from Idiomarina loihiensis==
-The line below this paragraph, containing "STRUCTURE_2qsd", creates the "Structure Box" on the page.
+<StructureSection load='2qsd' size='340' side='right'caption='[[2qsd]]' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QSD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QSD FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qsd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qsd OCA], [https://pdbe.org/2qsd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qsd RCSB], [https://www.ebi.ac.uk/pdbsum/2qsd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qsd ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2qsd TOPSAN]</span></td></tr>
--->
+</table>
-{{STRUCTURE_2qsd|  PDB=2qsd  |  SCENE=  }}
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
-===Crystal structure of a protein Il1583 from Idiomarina loihiensis===
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qs/2qsd_consurf.spt"</scriptWhenChecked>
-==About this Structure==
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-QSD is a 8 chains structure of sequences from [http://en.wikipedia.org/wiki/Idiomarina_loihiensis Idiomarina loihiensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QSD OCA].
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: Idiomarina loihiensis]]
+  </jmolCheckbox>
-[[Category: Almo, S C.]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2qsd ConSurf].
-[[Category: Bain, K.]]
+<div style="clear:both"></div>
-[[Category: Bonanno, J.]]
+__TOC__
-[[Category: Burley, S K.]]
+</StructureSection>
-[[Category: Gheyi, T.]]
+[[Category: Large Structures]]
-[[Category: Koss, J.]]
+[[Category: Almo SC]]
-[[Category: Mckenzie, C.]]
+[[Category: Bain K]]
-[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
+[[Category: Bonanno J]]
-[[Category: Patskovsky, Y.]]
+[[Category: Burley SK]]
-[[Category: Romero, R.]]
+[[Category: Gheyi T]]
-[[Category: Rutter, M.]]
+[[Category: Koss J]]
-[[Category: Sauder, J M.]]
+[[Category: Mckenzie C]]
-[[Category: Wasserman, S R.]]
+[[Category: Patskovsky Y]]
-[[Category: New york sgx research center for structural genomic]]
+[[Category: Romero R]]
-[[Category: New york structural genomics research consortium]]
+[[Category: Rutter M]]
-[[Category: Nysgrc]]
+[[Category: Sauder JM]]
-[[Category: Nysgxrc]]
+[[Category: Wasserman SR]]
-[[Category: Protein structure initiative]]
-[[Category: Psi-2]]
-[[Category: Structural genomic]]
-[[Category: Unknown function]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 10:58:38 2008''