3dio: Difference between revisions

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-{{Seed}}
-[[Image:3dio.png|left|200px]]
-<!--
+==Crystallization of the Thermotoga maritima lysine riboswitch bound to lysine, IRIDIUM HEXAMINE SOAK==
-The line below this paragraph, containing "STRUCTURE_3dio", creates the "Structure Box" on the page.
+<StructureSection load='3dio' size='340' side='right'caption='[[3dio]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3dio]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DIO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DIO FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1PE:PENTAETHYLENE+GLYCOL'>1PE</scene>, <scene name='pdbligand=CCC:CYTIDINE-5-PHOSPHATE-2,3-CYCLIC+PHOSPHATE'>CCC</scene>, <scene name='pdbligand=IRI:IRIDIUM+HEXAMMINE+ION'>IRI</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=LYS:LYSINE'>LYS</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-{{STRUCTURE_3dio|  PDB=3dio  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dio FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dio OCA], [https://pdbe.org/3dio PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dio RCSB], [https://www.ebi.ac.uk/pdbsum/3dio PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dio ProSAT]</span></td></tr>
+</table>
-===Crystallization of the Thermotoga maritima lysine riboswitch bound to lysine, IRIDIUM HEXAMINE SOAK===
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
-<!--
+[[Category: Thermotoga maritima]]
-The line below this paragraph, {{ABSTRACT_PUBMED_18784651}}, adds the Publication Abstract to the page
+[[Category: Serganov AA]]
-(as it appears on PubMed at http://www.pubmed.gov), where 18784651 is the PubMed ID number.
--->
-{{ABSTRACT_PUBMED_18784651}}
-==About this Structure==
-DIO is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DIO OCA].
-==Reference==
-Structural insights into amino acid binding and gene control by a lysine riboswitch., Serganov A, Huang L, Patel DJ, Nature. 2008 Oct 30;455(7217):1263-7. Epub 2008 Sep 10. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18784651 18784651]
-[[Category: Serganov, A A.]]
-[[Category: Lysine]]
-[[Category: Riboswitch]]
-[[Category: Rna]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Nov 12 10:02:31 2008''