3erm: Difference between revisions

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[[Image:3erm.jpg|left|200px]]


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==The crystal structure of a conserved protein with unknown function from Pseudomonas syringae pv. tomato str. DC3000==
The line below this paragraph, containing "STRUCTURE_3erm", creates the "Structure Box" on the page.
<StructureSection load='3erm' size='340' side='right'caption='[[3erm]], [[Resolution|resolution]] 2.45&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3erm]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_syringae_pv._tomato Pseudomonas syringae pv. tomato]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ERM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3ERM FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.45&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
{{STRUCTURE_3erm|  PDB=3erm  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3erm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3erm OCA], [https://pdbe.org/3erm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3erm RCSB], [https://www.ebi.ac.uk/pdbsum/3erm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3erm ProSAT], [https://www.topsan.org/Proteins/MCSG/3erm TOPSAN]</span></td></tr>
 
</table>
===The crystal structure of a conserved protein with unknown function from Pseudomonas syringae pv. tomato str. DC3000===
== Function ==
 
[https://www.uniprot.org/uniprot/Q887T9_PSESM Q887T9_PSESM]
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
3ERM is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pseudomonas_syringae_pv._tomato Pseudomonas syringae pv. tomato]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ERM OCA].  
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/er/3erm_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3erm ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Pseudomonas syringae pv. tomato]]
[[Category: Pseudomonas syringae pv. tomato]]
[[Category: Single protein]]
[[Category: Clancy S]]
[[Category: Clancy, S.]]
[[Category: Joachimiak A]]
[[Category: Joachimiak, A.]]
[[Category: Tan K]]
[[Category: MCSG, Midwest Center for Structural Genomics.]]
[[Category: Zhou M]]
[[Category: Tan, K.]]
[[Category: Zhou, M.]]
[[Category: Apc85034]]
[[Category: Mcsg]]
[[Category: Midwest center for structural genomic]]
[[Category: Ppspto1197]]
[[Category: Protein structure initiative]]
[[Category: Psi-2]]
[[Category: Seudomonas syringae pv. tomato str. dc3000]]
[[Category: Structural genomic]]
[[Category: Unknown function]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Oct 22 11:00:12 2008''

Latest revision as of 03:23, 28 December 2023

The crystal structure of a conserved protein with unknown function from Pseudomonas syringae pv. tomato str. DC3000The crystal structure of a conserved protein with unknown function from Pseudomonas syringae pv. tomato str. DC3000

Structural highlights

3erm is a 5 chain structure with sequence from Pseudomonas syringae pv. tomato. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.45Å
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

Q887T9_PSESM

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

3erm, resolution 2.45Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
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