2iee: Difference between revisions

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-{{Seed}}
-[[Image:2iee.png|left|200px]]
-<!--
+==Crystal Structure of YCKB_BACSU from Bacillus subtilis. Northeast Structural Genomics Consortium target SR574.==
-The line below this paragraph, containing "STRUCTURE_2iee", creates the "Structure Box" on the page.
+<StructureSection load='2iee' size='340' side='right'caption='[[2iee]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[2iee]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillus_globigii"_migula_1900 "bacillus globigii" migula 1900]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IEE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2IEE FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
--->
+<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">yckB ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Bacillus globigii" Migula 1900])</td></tr>
-{{STRUCTURE_2iee|  PDB=2iee  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2iee FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2iee OCA], [https://pdbe.org/2iee PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2iee RCSB], [https://www.ebi.ac.uk/pdbsum/2iee PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2iee ProSAT], [https://www.topsan.org/Proteins/NESGC/2iee TOPSAN]</span></td></tr>
+</table>
-===Crystal Structure of YCKB_BACSU from Bacillus subtilis. Northeast Structural Genomics Consortium target SR574.===
+== Function ==
+[[https://www.uniprot.org/uniprot/YCKB_BACSU YCKB_BACSU]] Probably part of a binding-protein-dependent transport system.
+== Evolutionary Conservation ==
-==About this Structure==
+[[Image:Consurf_key_small.gif|200px|right]]
-IEE is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IEE OCA].
+Check<jmol>
-[[Category: Bacillus subtilis]]
+  <jmolCheckbox>
-[[Category: Single protein]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ie/2iee_consurf.spt"</scriptWhenChecked>
-[[Category: Acton, T B.]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-[[Category: Baran, M C.]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: Chen, X C.]]
+  </jmolCheckbox>
-[[Category: Cunningham, K.]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2iee ConSurf].
-[[Category: Hunt, J F.]]
+<div style="clear:both"></div>
-[[Category: Jang, M.]]
+__TOC__
-[[Category: Jayaraman, S.]]
+</StructureSection>
-[[Category: Kuzin, A P.]]
+[[Category: Bacillus globigii migula 1900]]
-[[Category: Liu, J.]]
+[[Category: Large Structures]]
-[[Category: Ma, C.]]
+[[Category: Acton, T B]]
-[[Category: Montelione, G T.]]
+[[Category: Baran, M C]]
-[[Category: NESG, Northeast Structural Genomics Consortium.]]
+[[Category: Chen, X C]]
-[[Category: Rost, B.]]
+[[Category: Cunningham, K]]
-[[Category: Su, M.]]
+[[Category: Hunt, J F]]
-[[Category: Tong, L.]]
+[[Category: Jang, M]]
-[[Category: Xiao, R.]]
+[[Category: Jayaraman, S]]
+[[Category: Kuzin, A P]]
+[[Category: Liu, J]]
+[[Category: Ma, C]]
+[[Category: Montelione, G T]]
+[[Category: Structural genomic]]
+[[Category: Rost, B]]
+[[Category: Su, M]]
+[[Category: Tong, L]]
+[[Category: Xiao, R]]
 [[Category: Nesg]]
-[[Category: Northeast structural genomics consortium]]
+[[Category: PSI, Protein structure initiative]]
-[[Category: Protein structure initiative]]
-[[Category: Psi-2]]
 [[Category: Sr574]]
-[[Category: Structural genomic]]
+[[Category: Unknown function]]
-[[Category: X-ray]]
 [[Category: Yckb]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Sep 29 06:58:17 2008''