3dip: Difference between revisions

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[[Image:3dip.png|left|200px]]


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==Crystal structure of an enolase protein from the environmental genome shotgun sequencing of the Sargasso Sea==
The line below this paragraph, containing "STRUCTURE_3dip", creates the "Structure Box" on the page.
<StructureSection load='3dip' size='340' side='right'caption='[[3dip]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)  
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3dip]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Unidentified Unidentified]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DIP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DIP FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SIC:(2R)-2-[(3S)-3-AMINO-2,5-DIOXOPYRROLIDIN-1-YL]-3-SULFANYLPROPANOIC+ACID'>SIC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
{{STRUCTURE_3dip| PDB=3dip |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dip FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dip OCA], [https://pdbe.org/3dip PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dip RCSB], [https://www.ebi.ac.uk/pdbsum/3dip PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dip ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3dip TOPSAN]</span></td></tr>
</table>
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/di/3dip_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dip ConSurf].
<div style="clear:both"></div>


===Crystal structure of an enolase protein from the environmental genome shotgun sequencing of the Sargasso Sea===
==See Also==
 
*[[Enolase 3D structures|Enolase 3D structures]]
 
__TOC__
==About this Structure==
</StructureSection>
3DIP is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Unidentified Unidentified]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DIP OCA].
[[Category: Large Structures]]
[[Category: Single protein]]
[[Category: Unidentified]]
[[Category: Unidentified]]
[[Category: Almo, S C.]]
[[Category: Almo SC]]
[[Category: Bain, K T.]]
[[Category: Bain KT]]
[[Category: Bonanno, J B.]]
[[Category: Bonanno JB]]
[[Category: Burley, S K.]]
[[Category: Burley SK]]
[[Category: Freeman, J.]]
[[Category: Freeman J]]
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
[[Category: Ozyurt S]]
[[Category: Ozyurt, S.]]
[[Category: Sauder JM]]
[[Category: Sauder, J M.]]
[[Category: Smith D]]
[[Category: Smith, D.]]
[[Category: Wasserman S]]
[[Category: Wasserman, S.]]
[[Category: Zhang F]]
[[Category: Zhang, F.]]
[[Category: Isomerase]]
[[Category: Lyase]]
[[Category: New york sgx research center for structural genomic]]
[[Category: Nysgxrc]]
[[Category: Protein structure initiative]]
[[Category: Psi-2]]
[[Category: Structural genomic]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Sep 29 00:40:00 2008''

Latest revision as of 11:56, 15 November 2023

Crystal structure of an enolase protein from the environmental genome shotgun sequencing of the Sargasso SeaCrystal structure of an enolase protein from the environmental genome shotgun sequencing of the Sargasso Sea

Structural highlights

3dip is a 2 chain structure with sequence from Unidentified. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.5Å
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

3dip, resolution 2.50Å

Drag the structure with the mouse to rotate

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