3d0k: Difference between revisions

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OCA

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-{{Seed}}
-[[Image:3d0k.png|left|200px]]
-<!--
+==Crystal structure of the LpqC, poly(3-hydroxybutyrate) depolymerase from Bordetella parapertussis==
-The line below this paragraph, containing "STRUCTURE_3d0k", creates the "Structure Box" on the page.
+<StructureSection load='3d0k' size='340' side='right'caption='[[3d0k]], [[Resolution|resolution]] 1.83&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3d0k]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bordetella_parapertussis_12822 Bordetella parapertussis 12822]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D0K OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3D0K FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.83&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-{{STRUCTURE_3d0k|  PDB=3d0k  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3d0k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d0k OCA], [https://pdbe.org/3d0k PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3d0k RCSB], [https://www.ebi.ac.uk/pdbsum/3d0k PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3d0k ProSAT], [https://www.topsan.org/Proteins/MCSG/3d0k TOPSAN]</span></td></tr>
+</table>
-===Crystal structure of the LpqC, poly(3-hydroxybutyrate) depolymerase from Bordetella parapertussis===
+== Function ==
+[https://www.uniprot.org/uniprot/Q7W3B7_BORPA Q7W3B7_BORPA]
+== Evolutionary Conservation ==
-==About this Structure==
+[[Image:Consurf_key_small.gif|200px|right]]
-D0K is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bordetella_parapertussis_12822 Bordetella parapertussis 12822]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D0K OCA].
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d0/3d0k_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3d0k ConSurf].
+<div style="clear:both"></div>
+__TOC__
+</StructureSection>
 [[Category: Bordetella parapertussis 12822]]
-[[Category: Single protein]]
+[[Category: Large Structures]]
-[[Category: Jedrzejczak, R.]]
+[[Category: Jedrzejczak R]]
-[[Category: Joachimiak, A.]]
+[[Category: Joachimiak A]]
-[[Category: Kim, Y.]]
+[[Category: Kim Y]]
-[[Category: MCSG, Midwest Center for Structural Genomics.]]
+[[Category: Tesar C]]
-[[Category: Tesar, C.]]
-[[Category: Alpha-beta-alpha sandwich]]
-[[Category: Hydrolase]]
-[[Category: Mcsg]]
-[[Category: Midwest center for structural genomic]]
-[[Category: Protein structure initiative]]
-[[Category: Psi-2]]
-[[Category: Structural genomic]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Sep 28 22:59:29 2008''