2gkp: Difference between revisions

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[[Image:2gkp.png|left|200px]]


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==Protein of Unknown Function NMB0488 from Neisseria meningitidis==
The line below this paragraph, containing "STRUCTURE_2gkp", creates the "Structure Box" on the page.
<StructureSection load='2gkp' size='340' side='right'caption='[[2gkp]], [[Resolution|resolution]] 1.35&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2gkp]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Neimb Neimb]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GKP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GKP FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BME:BETA-MERCAPTOETHANOL'>BME</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-->
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
{{STRUCTURE_2gkp|  PDB=2gkp  |  SCENE=  }}
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">NMB0488 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=122586 NEIMB])</td></tr>
 
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2gkp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gkp OCA], [https://pdbe.org/2gkp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2gkp RCSB], [https://www.ebi.ac.uk/pdbsum/2gkp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2gkp ProSAT], [https://www.topsan.org/Proteins/MCSG/2gkp TOPSAN]</span></td></tr>
===Protein of Unknown Function NMB0488 from Neisseria meningitidis===
</table>
 
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
==About this Structure==
Check<jmol>
2GKP is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Neisseria_meningitidis Neisseria meningitidis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GKP OCA].  
  <jmolCheckbox>
[[Category: Neisseria meningitidis]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gk/2gkp_consurf.spt"</scriptWhenChecked>
[[Category: Single protein]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Bargassa, M.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Joachimiak, A.]]
  </jmolCheckbox>
[[Category: MCSG, Midwest Center for Structural Genomics.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2gkp ConSurf].
[[Category: Osipiuk, J.]]
<div style="clear:both"></div>
[[Category: Volkart, L.]]
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Neimb]]
[[Category: Bargassa, M]]
[[Category: Joachimiak, A]]
[[Category: Structural genomic]]
[[Category: Osipiuk, J]]
[[Category: Volkart, L]]
[[Category: Apc83854]]
[[Category: Apc83854]]
[[Category: Hypothetical protein]]
[[Category: Hypothetical protein]]
[[Category: Mcsg]]
[[Category: Mcsg]]
[[Category: Midwest center for structural genomic]]
[[Category: PSI, Protein structure initiative]]
[[Category: Protein structure initiative]]
[[Category: Unknown function]]
[[Category: Psi]]
[[Category: Structural genomic]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Sep 28 22:32:01 2008''

Latest revision as of 20:26, 10 March 2021

Protein of Unknown Function NMB0488 from Neisseria meningitidisProtein of Unknown Function NMB0488 from Neisseria meningitidis

Structural highlights

2gkp is a 1 chain structure with sequence from Neimb. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:, ,
NonStd Res:
Gene:NMB0488 (NEIMB)
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

2gkp, resolution 1.35Å

Drag the structure with the mouse to rotate

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