2r5r: Difference between revisions

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{{Seed}}
[[Image:2r5r.png|left|200px]]


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==The crystal structure of DUF198 from Nitrosomonas europaea ATCC 19718==
The line below this paragraph, containing "STRUCTURE_2r5r", creates the "Structure Box" on the page.
<StructureSection load='2r5r' size='340' side='right'caption='[[2r5r]], [[Resolution|resolution]] 3.05&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2r5r]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Nitrosomonas_europaea_ATCC_19718 Nitrosomonas europaea ATCC 19718]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R5R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2R5R FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.05&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
{{STRUCTURE_2r5r|  PDB=2r5r  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2r5r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2r5r OCA], [https://pdbe.org/2r5r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2r5r RCSB], [https://www.ebi.ac.uk/pdbsum/2r5r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2r5r ProSAT], [https://www.topsan.org/Proteins/MCSG/2r5r TOPSAN]</span></td></tr>
 
</table>
===The crystal structure of DUF198 from Nitrosomonas europaea ATCC 19718===
== Function ==
 
[https://www.uniprot.org/uniprot/GCH4_NITEU GCH4_NITEU] Converts GTP to 7,8-dihydroneopterin triphosphate.[HAMAP-Rule:MF_01527]
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
2R5R is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Nitrosomonas_europaea_atcc_19718 Nitrosomonas europaea atcc 19718]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R5R OCA].  
Check<jmol>
[[Category: Nitrosomonas europaea atcc 19718]]
  <jmolCheckbox>
[[Category: Single protein]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r5/2r5r_consurf.spt"</scriptWhenChecked>
[[Category: Bargassa, M.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: Bigelow, L.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Freeman, L.]]
  </jmolCheckbox>
[[Category: Joachimiak, A.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2r5r ConSurf].
[[Category: MCSG, Midwest Center for Structural Genomics.]]
<div style="clear:both"></div>
[[Category: Nocek, B.]]
__TOC__
[[Category: Patterson, S.]]
</StructureSection>
[[Category: Tan, K.]]
[[Category: Large Structures]]
[[Category: Wu, R.]]
[[Category: Nitrosomonas europaea ATCC 19718]]
[[Category: Apc86493]]
[[Category: Bargassa M]]
[[Category: Duf198]]
[[Category: Bigelow L]]
[[Category: Mcsg]]
[[Category: Freeman L]]
[[Category: Midwest center for structural genomic]]
[[Category: Joachimiak A]]
[[Category: Nitrosomonas europaea atcc 19718]]
[[Category: Nocek B]]
[[Category: Protein structure initiative]]
[[Category: Patterson S]]
[[Category: Psi-2]]
[[Category: Tan K]]
[[Category: Structural genomic]]
[[Category: Wu R]]
[[Category: Unknown function]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Sep 28 21:24:29 2008''

Latest revision as of 12:29, 6 November 2024

The crystal structure of DUF198 from Nitrosomonas europaea ATCC 19718The crystal structure of DUF198 from Nitrosomonas europaea ATCC 19718

Structural highlights

2r5r is a 1 chain structure with sequence from Nitrosomonas europaea ATCC 19718. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 3.05Å
Ligands:, ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

GCH4_NITEU Converts GTP to 7,8-dihydroneopterin triphosphate.[HAMAP-Rule:MF_01527]

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

2r5r, resolution 3.05Å

Drag the structure with the mouse to rotate

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OCA
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