2cz5: Difference between revisions

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-{{Seed}}
-[[Image:2cz5.png|left|200px]]
-<!--
+==Crystal structure of orotidine 5'-phosphate decarboxylase from Pyrococcus horikoshii OT3==
-The line below this paragraph, containing "STRUCTURE_2cz5", creates the "Structure Box" on the page.
+<StructureSection load='2cz5' size='340' side='right'caption='[[2cz5]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[2cz5]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CZ5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2CZ5 FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.85&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-{{STRUCTURE_2cz5|  PDB=2cz5  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2cz5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cz5 OCA], [https://pdbe.org/2cz5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2cz5 RCSB], [https://www.ebi.ac.uk/pdbsum/2cz5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2cz5 ProSAT], [https://www.topsan.org/Proteins/RSGI/2cz5 TOPSAN]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/PYRF_PYRHO PYRF_PYRHO] Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP) (By similarity).[HAMAP-Rule:MF_01200_A]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cz/2cz5_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2cz5 ConSurf].
+<div style="clear:both"></div>
-===Crystal structure of orotidine 5'-phosphate decarboxylase from Pyrococcus horikoshii OT3===
+==See Also==
+*[[Uridine 5'-monophosphate synthase 3D structures|Uridine 5'-monophosphate synthase 3D structures]]
+__TOC__
-==About this Structure==
+</StructureSection>
-CZ5 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CZ5 OCA].
+[[Category: Large Structures]]
-[[Category: Orotidine-5'-phosphate decarboxylase]]
 [[Category: Pyrococcus horikoshii]]
-[[Category: Single protein]]
+[[Category: Arai R]]
-[[Category: Arai, R.]]
+[[Category: Ito K]]
-[[Category: Ito, K.]]
+[[Category: Kamo-Uchikubo T]]
-[[Category: Kamo-Uchikubo, T.]]
+[[Category: Shirouzu M]]
-[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+[[Category: Yokoyama S]]
-[[Category: Shirouzu, M.]]
-[[Category: Yokoyama, S.]]
-[[Category: National project on protein structural and functional analyse]]
-[[Category: Nppsfa]]
-[[Category: Orotidine 5'-phosphate decarboxylase]]
-[[Category: Pyrimidine biosynthesis]]
-[[Category: Riken structural genomics/proteomics initiative]]
-[[Category: Rsgi]]
-[[Category: Structural genomic]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Sep 28 20:39:31 2008''