2df8: Difference between revisions

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[[Image:2df8.png|left|200px]]


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==Crystal Structure of the PH0510 protein from Pyrococcus horikoshii OT3 in complex with beta-D-Fructopyranose-1-phosphate==
The line below this paragraph, containing "STRUCTURE_2df8", creates the "Structure Box" on the page.
<StructureSection load='2df8' size='340' side='right'caption='[[2df8]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2df8]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii_OT3 Pyrococcus horikoshii OT3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DF8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DF8 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=F1P:1-O-PHOSPHONO-BETA-D-FRUCTOPYRANOSE'>F1P</scene></td></tr>
{{STRUCTURE_2df8|  PDB=2df8  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2df8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2df8 OCA], [https://pdbe.org/2df8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2df8 RCSB], [https://www.ebi.ac.uk/pdbsum/2df8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2df8 ProSAT], [https://www.topsan.org/Proteins/RSGI/2df8 TOPSAN]</span></td></tr>
 
</table>
===Crystal Structure of the PH0510 protein from Pyrococcus horikoshii OT3 in complex with beta-D-Fructopyranose-1-phosphate===
== Function ==
 
[https://www.uniprot.org/uniprot/O58246_PYRHO O58246_PYRHO]  
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
2DF8 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DF8 OCA].  
Check<jmol>
[[Category: Pyrococcus horikoshii]]
  <jmolCheckbox>
[[Category: Single protein]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/df/2df8_consurf.spt"</scriptWhenChecked>
[[Category: Kunishima, N.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Mizutani, H.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
  </jmolCheckbox>
[[Category: National project on protein structural and functional analyse]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2df8 ConSurf].
[[Category: Nppsfa]]
<div style="clear:both"></div>
[[Category: Riken structural genomics/proteomics initiative]]
__TOC__
[[Category: Rsgi]]
</StructureSection>
[[Category: Structural genomic]]
[[Category: Large Structures]]
[[Category: Sugar binding protein]]
[[Category: Pyrococcus horikoshii OT3]]
 
[[Category: Kunishima N]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Sep 28 20:15:08 2008''
[[Category: Mizutani H]]

Latest revision as of 11:26, 25 October 2023

Crystal Structure of the PH0510 protein from Pyrococcus horikoshii OT3 in complex with beta-D-Fructopyranose-1-phosphateCrystal Structure of the PH0510 protein from Pyrococcus horikoshii OT3 in complex with beta-D-Fructopyranose-1-phosphate

Structural highlights

2df8 is a 2 chain structure with sequence from Pyrococcus horikoshii OT3. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.5Å
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

O58246_PYRHO

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

2df8, resolution 1.50Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
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