1vqy: Difference between revisions

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[[Image:1vqy.png|left|200px]]


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==CRYSTAL STRUCTURE OF a NIPSNAP FAMILY PROTEIN (ATU5224) FROM AGROBACTERIUM TUMEFACIENS STR. C58 AT 2.40 A RESOLUTION==
The line below this paragraph, containing "STRUCTURE_1vqy", creates the "Structure Box" on the page.
<StructureSection load='1vqy' size='340' side='right'caption='[[1vqy]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)  
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1vqy]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrobacterium_fabrum_str._C58 Agrobacterium fabrum str. C58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VQY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VQY FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
{{STRUCTURE_1vqy|  PDB=1vqy |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vqy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vqy OCA], [https://pdbe.org/1vqy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vqy RCSB], [https://www.ebi.ac.uk/pdbsum/1vqy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vqy ProSAT], [https://www.topsan.org/Proteins/JCSG/1vqy TOPSAN]</span></td></tr>
 
</table>
===Crystal structure of a NIPSNAP family protein with unknown function (np_396154.1) from Agrobacterium tumefaciens at 2.40 A resolution===
== Function ==
 
[https://www.uniprot.org/uniprot/A9CLJ4_AGRFC A9CLJ4_AGRFC]  
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
1VQY is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Agrobacterium_tumefaciens Agrobacterium tumefaciens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VQY OCA].  
Check<jmol>
[[Category: Agrobacterium tumefaciens]]
  <jmolCheckbox>
[[Category: Single protein]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vq/1vqy_consurf.spt"</scriptWhenChecked>
[[Category: JCSG, Joint Center for Structural Genomics.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: Hypothetical protein]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Jcsg]]
  </jmolCheckbox>
[[Category: Joint center for structural genomic]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vqy ConSurf].
[[Category: Np_396154 1]]
<div style="clear:both"></div>
[[Category: Protein structure initiative]]
__TOC__
[[Category: Psi]]
</StructureSection>
[[Category: Structural genomic]]
[[Category: Agrobacterium fabrum str. C58]]
 
[[Category: Large Structures]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Sep 28 20:06:58 2008''

Latest revision as of 03:37, 21 November 2024

CRYSTAL STRUCTURE OF a NIPSNAP FAMILY PROTEIN (ATU5224) FROM AGROBACTERIUM TUMEFACIENS STR. C58 AT 2.40 A RESOLUTIONCRYSTAL STRUCTURE OF a NIPSNAP FAMILY PROTEIN (ATU5224) FROM AGROBACTERIUM TUMEFACIENS STR. C58 AT 2.40 A RESOLUTION

Structural highlights

1vqy is a 8 chain structure with sequence from Agrobacterium fabrum str. C58. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.4Å
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

A9CLJ4_AGRFC

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

1vqy, resolution 2.40Å

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