1vmd: Difference between revisions

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{{Seed}}
[[Image:1vmd.png|left|200px]]


<!--
==Crystal structure of Methylglyoxal synthase (TM1185) from Thermotoga maritima at 2.06 A resolution==
The line below this paragraph, containing "STRUCTURE_1vmd", creates the "Structure Box" on the page.
<StructureSection load='1vmd' size='340' side='right'caption='[[1vmd]], [[Resolution|resolution]] 2.06&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1vmd]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VMD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VMD FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.06&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
{{STRUCTURE_1vmd|  PDB=1vmd  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vmd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vmd OCA], [https://pdbe.org/1vmd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vmd RCSB], [https://www.ebi.ac.uk/pdbsum/1vmd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vmd ProSAT], [https://www.topsan.org/Proteins/JCSG/1vmd TOPSAN]</span></td></tr>
 
</table>
===Crystal structure of Methylglyoxal synthase (TM1185) from Thermotoga maritima at 2.06 A resolution===
== Function ==
 
[https://www.uniprot.org/uniprot/MGSA_THEMA MGSA_THEMA]
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
1VMD is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VMD OCA].  
Check<jmol>
[[Category: Methylglyoxal synthase]]
  <jmolCheckbox>
[[Category: Single protein]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vm/1vmd_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vmd ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Thermotoga maritima]]
[[Category: Thermotoga maritima]]
[[Category: JCSG, Joint Center for Structural Genomics.]]
[[Category: Jcsg]]
[[Category: Joint center for structural genomic]]
[[Category: Methylglyoxal synthase]]
[[Category: Protein structure initiative]]
[[Category: Psi]]
[[Category: Structural genomic]]
[[Category: Tm1185]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Sep 28 19:37:08 2008''

Latest revision as of 09:40, 23 August 2023

Crystal structure of Methylglyoxal synthase (TM1185) from Thermotoga maritima at 2.06 A resolutionCrystal structure of Methylglyoxal synthase (TM1185) from Thermotoga maritima at 2.06 A resolution

Structural highlights

1vmd is a 2 chain structure with sequence from Thermotoga maritima. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.06Å
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

MGSA_THEMA

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

1vmd, resolution 2.06Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
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