3dmn: Difference between revisions

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-{{Seed}}
-[[Image:3dmn.png|left|200px]]
-<!--
+==The crystal structure of the C-terminal domain of a possilbe DNA helicase from Lactobacillus plantarun WCFS1==
-The line below this paragraph, containing "STRUCTURE_3dmn", creates the "Structure Box" on the page.
+<StructureSection load='3dmn' size='340' side='right'caption='[[3dmn]], [[Resolution|resolution]] 1.66&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3dmn]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Lactiplantibacillus_plantarum Lactiplantibacillus plantarum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DMN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DMN FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.66&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-{{STRUCTURE_3dmn|  PDB=3dmn  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dmn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dmn OCA], [https://pdbe.org/3dmn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dmn RCSB], [https://www.ebi.ac.uk/pdbsum/3dmn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dmn ProSAT], [https://www.topsan.org/Proteins/MCSG/3dmn TOPSAN]</span></td></tr>
+</table>
-===The crystal structure of the C-terminal domain of a possilbe DNA helicase from Lactobacillus plantarun WCFS1===
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
-==About this Structure==
+  <jmolCheckbox>
-DMN is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Lactobacillus_plantarum Lactobacillus plantarum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DMN OCA].
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dm/3dmn_consurf.spt"</scriptWhenChecked>
-[[Category: Lactobacillus plantarum]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-[[Category: Single protein]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: Gu, M.]]
+  </jmolCheckbox>
-[[Category: Joachimiak, A.]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dmn ConSurf].
-[[Category: MCSG, Midwest Center for Structural Genomics.]]
+<div style="clear:both"></div>
-[[Category: Tan, K.]]
+__TOC__
-[[Category: Zhou, M.]]
+</StructureSection>
-[[Category: Apc89291 2]]
+[[Category: Lactiplantibacillus plantarum]]
-[[Category: Dna helicase]]
+[[Category: Large Structures]]
-[[Category: Helicase]]
+[[Category: Gu M]]
-[[Category: Lactobacillus plantarum wcfs1]]
+[[Category: Joachimiak A]]
-[[Category: Mcsg]]
+[[Category: Tan K]]
-[[Category: Midwest center for structural genomic]]
+[[Category: Zhou M]]
-[[Category: Protein structure initiative]]
-[[Category: Psi-2]]
-[[Category: Structural genomic]]
-[[Category: Unknown function]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Sep 28 19:20:21 2008''