1v6t: Difference between revisions

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[[Image:1v6t.png|left|200px]]


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==Crystal Structure of Lactam Utilization Protein from Pyrococcus horikoshii Ot3==
The line below this paragraph, containing "STRUCTURE_1v6t", creates the "Structure Box" on the page.
<StructureSection load='1v6t' size='340' side='right'caption='[[1v6t]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1v6t]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii_OT3 Pyrococcus horikoshii OT3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V6T OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1V6T FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1v6t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v6t OCA], [https://pdbe.org/1v6t PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1v6t RCSB], [https://www.ebi.ac.uk/pdbsum/1v6t PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1v6t ProSAT], [https://www.topsan.org/Proteins/RSGI/1v6t TOPSAN]</span></td></tr>
{{STRUCTURE_1v6t|  PDB=1v6t  |  SCENE=  }}
</table>
 
== Function ==
===Crystal Structure of Lactam Utilization Protein from Pyrococcus horikoshii Ot3===
[https://www.uniprot.org/uniprot/PXPA_PYRHO PXPA_PYRHO] Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.[HAMAP-Rule:MF_00691]
 
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
==About this Structure==
Check<jmol>
1V6T is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V6T OCA].  
  <jmolCheckbox>
[[Category: Pyrococcus horikoshii]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v6/1v6t_consurf.spt"</scriptWhenChecked>
[[Category: Single protein]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Kunishima, N.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Mizutani, H.]]
  </jmolCheckbox>
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1v6t ConSurf].
[[Category: Lactam utilization protein]]
<div style="clear:both"></div>
[[Category: Riken structural genomics/proteomics initiative]]
__TOC__
[[Category: Rsgi]]
</StructureSection>
[[Category: Structural genomic]]
[[Category: Large Structures]]
[[Category: Tim-barrel]]
[[Category: Pyrococcus horikoshii OT3]]
 
[[Category: Kunishima N]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Sep 28 18:30:03 2008''
[[Category: Mizutani H]]

Latest revision as of 02:58, 28 December 2023

Crystal Structure of Lactam Utilization Protein from Pyrococcus horikoshii Ot3Crystal Structure of Lactam Utilization Protein from Pyrococcus horikoshii Ot3

Structural highlights

1v6t is a 1 chain structure with sequence from Pyrococcus horikoshii OT3. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.7Å
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

PXPA_PYRHO Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.[HAMAP-Rule:MF_00691]

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

1v6t, resolution 1.70Å

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Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
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