1pzr: Difference between revisions

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OCA

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-[[Image:1pzr.gif|left|200px]]<br /><applet load="1pzr" size="450" color="white" frame="true" align="right" spinBox="true"
-caption="1pzr" />
-'''Structure of fused docking domains from the erythromycin polyketide synthase (DEBS), a model for the interaction between DEBS2 and DEBS3: the B domain'''<br />
-==Overview==
+==Structure of fused docking domains from the erythromycin polyketide synthase (DEBS), a model for the interaction between DEBS2 and DEBS3: the B domain==
-Polyketides from actinomycete bacteria provide the basis for many valuable, medicines, so engineering genes for their biosynthesis to produce variant, molecules holds promise for drug discovery. The modular polyketide, synthases are particularly amenable to this approach, because each cycle, of chain extension is catalyzed by a different module of enzymes, and the, modules are arranged within giant multienzyme subunits in the order in, which they act. Protein-protein interactions between terminal docking, domains of successive multienzymes promote their correct positioning, within the assembly line, but because the overall complex is not stable in, vitro, the key interactions have not been identified. We present here the, NMR solution structure of a 120 residue polypeptide representing a typical, pair of such domains, fused at their respective C and N termini: it adopts, a stable dimeric structure which reveals the detailed role of these, (predominantly helical) domains in docking and dimerization by modular, polyketide synthases.
+<StructureSection load='1pzr' size='340' side='right'caption='[[1pzr]]' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[1pzr]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharopolyspora_erythraea Saccharopolyspora erythraea]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PZR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1PZR FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1pzr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pzr OCA], [https://pdbe.org/1pzr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1pzr RCSB], [https://www.ebi.ac.uk/pdbsum/1pzr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1pzr ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/ERYA2_SACER ERYA2_SACER]
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+Polyketides from actinomycete bacteria provide the basis for many valuable medicines, so engineering genes for their biosynthesis to produce variant molecules holds promise for drug discovery. The modular polyketide synthases are particularly amenable to this approach, because each cycle of chain extension is catalyzed by a different module of enzymes, and the modules are arranged within giant multienzyme subunits in the order in which they act. Protein-protein interactions between terminal docking domains of successive multienzymes promote their correct positioning within the assembly line, but because the overall complex is not stable in vitro, the key interactions have not been identified. We present here the NMR solution structure of a 120 residue polypeptide representing a typical pair of such domains, fused at their respective C and N termini: it adopts a stable dimeric structure which reveals the detailed role of these (predominantly helical) domains in docking and dimerization by modular polyketide synthases.
-==About this Structure==
+The structure of docking domains in modular polyketide synthases.,Broadhurst RW, Nietlispach D, Wheatcroft MP, Leadlay PF, Weissman KJ Chem Biol. 2003 Aug;10(8):723-31. PMID:12954331<ref>PMID:12954331</ref>
-PZR is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Saccharopolyspora_erythraea Saccharopolyspora erythraea]. Active as [http://en.wikipedia.org/wiki/Erythronolide_synthase Erythronolide synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.3.1.94 2.3.1.94] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1PZR OCA].
-==Reference==
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-The structure of docking domains in modular polyketide synthases., Broadhurst RW, Nietlispach D, Wheatcroft MP, Leadlay PF, Weissman KJ, Chem Biol. 2003 Aug;10(8):723-31. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=12954331 12954331]
+</div>
-[[Category: Erythronolide synthase]]
+<div class="pdbe-citations 1pzr" style="background-color:#fffaf0;"></div>
+==See Also==
+*[[6-deoxyerythronolide B synthase 3D structures|6-deoxyerythronolide B synthase 3D structures]]
+== References ==
+<references/>
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
 [[Category: Saccharopolyspora erythraea]]
-[[Category: Single protein]]
+[[Category: Broadhurst RW]]
-[[Category: Broadhurst, R.W.]]
+[[Category: Leadlay PF]]
-[[Category: Leadlay, P.F.]]
+[[Category: Nietlispach D]]
-[[Category: Nietlispach, D.]]
+[[Category: Weissman KJ]]
-[[Category: Weissman, K.J.]]
+[[Category: Wheatcroft MP]]
-[[Category: Wheatcroft, M.P.]]
-[[Category: four helix bundle]]
-[[Category: homodimer]]
-''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 00:15:55 2007''