1yd6: Difference between revisions

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[[Image:1yd6.png|left|200px]]


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==Crystal structure of the GIY-YIG N-terminal endonuclease domain of UvrC from Bacillus caldotenax==
The line below this paragraph, containing "STRUCTURE_1yd6", creates the "Structure Box" on the page.
<StructureSection load='1yd6' size='340' side='right'caption='[[1yd6]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1yd6]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_caldotenax Bacillus caldotenax]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YD6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YD6 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
{{STRUCTURE_1yd6| PDB=1yd6 |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yd6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yd6 OCA], [https://pdbe.org/1yd6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yd6 RCSB], [https://www.ebi.ac.uk/pdbsum/1yd6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yd6 ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/UVRC_GEOKA UVRC_GEOKA] The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.[HAMAP-Rule:MF_00203]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yd/1yd6_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1yd6 ConSurf].
<div style="clear:both"></div>


===Crystal structure of the GIY-YIG N-terminal endonuclease domain of UvrC from Bacillus caldotenax===
==See Also==
 
*[[UvrABC|UvrABC]]
 
__TOC__
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</StructureSection>
The line below this paragraph, {{ABSTRACT_PUBMED_15692561}}, adds the Publication Abstract to the page
[[Category: Large Structures]]
(as it appears on PubMed at http://www.pubmed.gov), where 15692561 is the PubMed ID number.
[[Category: Croteau DL]]
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[[Category: DellaVecchia MJ]]
{{ABSTRACT_PUBMED_15692561}}
[[Category: Karakas E]]
 
[[Category: Kisker C]]
==About this Structure==
[[Category: Rhau B]]
Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YD6 OCA].
[[Category: Skorvaga M]]
 
[[Category: Truglio JJ]]
==Reference==
[[Category: Van Houten B]]
Structural insights into the first incision reaction during nucleotide excision repair., Truglio JJ, Rhau B, Croteau DL, Wang L, Skorvaga M, Karakas E, DellaVecchia MJ, Wang H, Van Houten B, Kisker C, EMBO J. 2005 Mar 9;24(5):885-94. Epub 2005 Feb 3. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15692561 15692561]
[[Category: Wang H]]
[[Category: Croteau, D L.]]
[[Category: Wang L]]
[[Category: DellaVecchia, M J.]]
[[Category: Houten, B Van.]]
[[Category: Karakas, E.]]
[[Category: Kisker, C.]]
[[Category: Rhau, B.]]
[[Category: Skorvaga, M.]]
[[Category: Truglio, J J.]]
[[Category: Wang, H.]]
[[Category: Wang, L.]]
[[Category: Dna binding protein]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 11:01:43 2008''

Latest revision as of 16:37, 13 March 2024

Crystal structure of the GIY-YIG N-terminal endonuclease domain of UvrC from Bacillus caldotenaxCrystal structure of the GIY-YIG N-terminal endonuclease domain of UvrC from Bacillus caldotenax

Structural highlights

1yd6 is a 4 chain structure with sequence from Bacillus caldotenax. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2Å
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

UVRC_GEOKA The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.[HAMAP-Rule:MF_00203]

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

1yd6, resolution 2.00Å

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