3bf7: Difference between revisions

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-{{Seed}}
-[[Image:3bf7.png|left|200px]]
-<!--
+==1.1 resolution structure of ybfF, a new esterase from Escherichia coli: a unique substrate-binding crevice generated by domain arrangement==
-The line below this paragraph, containing "STRUCTURE_3bf7", creates the "Structure Box" on the page.
+<StructureSection load='3bf7' size='340' side='right'caption='[[3bf7]], [[Resolution|resolution]] 1.10&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3bf7]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BF7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BF7 FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.1&#8491;</td></tr>
--->
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bf7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bf7 OCA], [https://pdbe.org/3bf7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bf7 RCSB], [https://www.ebi.ac.uk/pdbsum/3bf7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bf7 ProSAT]</span></td></tr>
-{{STRUCTURE_3bf7|  PDB=3bf7  |  SCENE=  }}
+</table>
+== Function ==
-===1.1 resolution structure of ybfF, a new esterase from Escherichia coli: a unique substrate-binding crevice generated by domain arrangement===
+[https://www.uniprot.org/uniprot/YBFF_ECOLI YBFF_ECOLI] Displays esterase activity toward palmitoyl-CoA, malonyl-CoA and pNP-butyrate.<ref>PMID:15808744</ref>
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
-<!--
+Check<jmol>
-The line below this paragraph, {{ABSTRACT_PUBMED_18215690}}, adds the Publication Abstract to the page
+  <jmolCheckbox>
-(as it appears on PubMed at http://www.pubmed.gov), where 18215690 is the PubMed ID number.
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bf/3bf7_consurf.spt"</scriptWhenChecked>
--->
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-{{ABSTRACT_PUBMED_18215690}}
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
-==About this Structure==
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bf7 ConSurf].
-BF7 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BF7 OCA].
+<div style="clear:both"></div>
+== References ==
-==Reference==
+<references/>
-High-resolution structure of ybfF from Escherichia coli K12: a unique substrate-binding crevice generated by domain arrangement., Park SY, Lee SH, Lee J, Nishi K, Kim YS, Jung CH, Kim JS, J Mol Biol. 2008 Mar 7;376(5):1426-37. Epub 2008 Jan 4. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18215690 18215690]
+__TOC__
+</StructureSection>
 [[Category: Escherichia coli]]
-[[Category: Single protein]]
+[[Category: Large Structures]]
-[[Category: Kim, J S.]]
+[[Category: Kim JS]]
-[[Category: Park, S K.]]
+[[Category: Park SK]]
-[[Category: Esterase]]
-[[Category: Helical cap]]
-[[Category: Hydrolase]]
-[[Category: Thioesterase]]
-[[Category: Ybff]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 06:54:06 2008''