1par: Difference between revisions

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New page: left|200px<br /><applet load="1par" size="450" color="white" frame="true" align="right" spinBox="true" caption="1par, resolution 2.600Å" /> '''DNA RECOGNITION BY ...
 
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[[Image:1par.gif|left|200px]]<br /><applet load="1par" size="450" color="white" frame="true" align="right" spinBox="true"
caption="1par, resolution 2.600&Aring;" />
'''DNA RECOGNITION BY BETA-SHEETS IN THE ARC REPRESSOR-OPERATOR CRYSTAL STRUCTURE'''<br />


==Overview==
==DNA RECOGNITION BY BETA-SHEETS IN THE ARC REPRESSOR-OPERATOR CRYSTAL STRUCTURE==
Transcription of the ant gene during lytic growth of bacteriophage P22, (ref. 1) is regulated by the cooperative binding of two Arc repressor, dimers to a 21-base-pair operator site. Here we report the co-crystal, structure of this Arc tetramer-operator complex at 2.6 A resolution. As, expected from genetic and structural studies and from the co-crystal, structure of the homologous Escherichia coli MetJ repressor, each Arc, dimer uses an antiparallel beta-sheet to recognize bases in the major, groove. However, the Arc and MetJ complexes differ in several important, ways: the beta-sheet-DNA interactions of Arc are far less symmetrical; DNA, binding by Arc is accompanied by important conformational changes in the, beta-sheet; and Arc uses a different part of its protein surface for, dimer-dimer interactions.
<StructureSection load='1par' size='340' side='right'caption='[[1par]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
 
== Structural highlights ==
==About this Structure==
<table><tr><td colspan='2'>[[1par]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_virus_P22 Salmonella virus P22]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PAR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1PAR FirstGlance]. <br>
1PAR is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Yersinia_phage_py54 Yersinia phage py54]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1PAR OCA].  
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
 
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1par FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1par OCA], [https://pdbe.org/1par PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1par RCSB], [https://www.ebi.ac.uk/pdbsum/1par PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1par ProSAT]</span></td></tr>
==Reference==
</table>
DNA recognition by beta-sheets in the Arc repressor-operator crystal structure., Raumann BE, Rould MA, Pabo CO, Sauer RT, Nature. 1994 Feb 24;367(6465):754-7. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=8107872 8107872]
== Function ==
[[Category: Single protein]]
[https://www.uniprot.org/uniprot/RARC_BPP22 RARC_BPP22] This protein acts as a transcriptional repressor of its own gene arc and of gene ant.
[[Category: Yersinia phage py54]]
__TOC__
[[Category: Pabo, C.O.]]
</StructureSection>
[[Category: Raumann, B.E.]]
[[Category: Large Structures]]
[[Category: Rould, M.A.]]
[[Category: Salmonella virus P22]]
[[Category: Sauer, R.T.]]
[[Category: Pabo CO]]
[[Category: double helix]]
[[Category: Raumann BE]]
[[Category: protein-dna complex]]
[[Category: Rould MA]]
 
[[Category: Sauer RT]]
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 23:38:42 2007''

Latest revision as of 11:06, 14 February 2024

DNA RECOGNITION BY BETA-SHEETS IN THE ARC REPRESSOR-OPERATOR CRYSTAL STRUCTUREDNA RECOGNITION BY BETA-SHEETS IN THE ARC REPRESSOR-OPERATOR CRYSTAL STRUCTURE

Structural highlights

1par is a 6 chain structure with sequence from Salmonella virus P22. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.6Å
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

RARC_BPP22 This protein acts as a transcriptional repressor of its own gene arc and of gene ant.

1par, resolution 2.60Å

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