1x28: Difference between revisions

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-{{Seed}}
-[[Image:1x28.png|left|200px]]
-<!--
+==Crystal Structure of e.coli AspAT complexed with N-phosphopyridoxyl-L-glutamic acid==
-The line below this paragraph, containing "STRUCTURE_1x28", creates the "Structure Box" on the page.
+<StructureSection load='1x28' size='340' side='right'caption='[[1x28]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1x28]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X28 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1X28 FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PGU:N-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)-L-GLUTAMIC+ACID'>PGU</scene></td></tr>
-{{STRUCTURE_1x28|  PDB=1x28  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1x28 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1x28 OCA], [https://pdbe.org/1x28 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1x28 RCSB], [https://www.ebi.ac.uk/pdbsum/1x28 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1x28 ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/AAT_ECOLI AAT_ECOLI]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/x2/1x28_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1x28 ConSurf].
+<div style="clear:both"></div>
-===Crystal Structure of e.coli AspAT complexed with N-phosphopyridoxyl-L-glutamic acid===
+==See Also==
+*[[Aspartate aminotransferase 3D structures|Aspartate aminotransferase 3D structures]]
+__TOC__
-<!--
+</StructureSection>
-The line below this paragraph, {{ABSTRACT_PUBMED_15938611}}, adds the Publication Abstract to the page
-(as it appears on PubMed at http://www.pubmed.gov), where 15938611 is the PubMed ID number.
--->
-{{ABSTRACT_PUBMED_15938611}}
-==About this Structure==
-X28 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X28 OCA].
-==Reference==
-Binding of C5-dicarboxylic substrate to aspartate aminotransferase: implications for the conformational change at the transaldimination step., Islam MM, Goto M, Miyahara I, Ikushiro H, Hirotsu K, Hayashi H, Biochemistry. 2005 Jun 14;44(23):8218-29. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15938611 15938611]
-[[Category: Aspartate transaminase]]
 [[Category: Escherichia coli]]
-[[Category: Single protein]]
+[[Category: Large Structures]]
-[[Category: Goto, M.]]
+[[Category: Goto M]]
-[[Category: Plp-dependent enzyme]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 23:42:48 2008''