2pyk: Difference between revisions

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-{{Seed}}
-[[Image:2pyk.png|left|200px]]
-<!--
+==Crystal structure of Staphylococcal nuclease variant V66Q/P117G/H124L/S128A at room temperature==
-The line below this paragraph, containing "STRUCTURE_2pyk", creates the "Structure Box" on the page.
+<StructureSection load='2pyk' size='340' side='right'caption='[[2pyk]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[2pyk]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PYK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PYK FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
--->
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pyk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pyk OCA], [https://pdbe.org/2pyk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pyk RCSB], [https://www.ebi.ac.uk/pdbsum/2pyk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pyk ProSAT]</span></td></tr>
-{{STRUCTURE_2pyk|  PDB=2pyk  |  SCENE=  }}
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/A5A513_STAAU A5A513_STAAU]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/py/2pyk_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pyk ConSurf].
+<div style="clear:both"></div>
-===Crystal structure of Staphylococcal nuclease variant V66Q/P117G/H124L/S128A at room temperature===
+==See Also==
+*[[Staphylococcal nuclease 3D structures|Staphylococcal nuclease 3D structures]]
+__TOC__
-<!--
+</StructureSection>
-The line below this paragraph, {{ABSTRACT_PUBMED_18178652}}, adds the Publication Abstract to the page
+[[Category: Large Structures]]
-(as it appears on PubMed at http://www.pubmed.gov), where 18178652 is the PubMed ID number.
--->
-{{ABSTRACT_PUBMED_18178652}}
-==About this Structure==
-PYK is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PYK OCA].
-==Reference==
-Crystallographic study of hydration of an internal cavity in engineered proteins with buried polar or ionizable groups., Schlessman JL, Abe C, Gittis A, Karp DA, Dolan MA, Garcia-Moreno E B, Biophys J. 2008 Apr 15;94(8):3208-16. Epub 2008 Jan 4. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18178652 18178652]
-[[Category: Micrococcal nuclease]]
-[[Category: Single protein]]
 [[Category: Staphylococcus aureus]]
-[[Category: Abe, C.]]
+[[Category: Abe C]]
-[[Category: Garcia-Moreno, E B.]]
+[[Category: Garcia-Moreno EB]]
-[[Category: Schlessman, J L.]]
+[[Category: Schlessman JL]]
-[[Category: Hydrolase]]
-[[Category: Hyperstable variant]]
-[[Category: Internal water]]
-[[Category: Nuclease]]
-[[Category: Staphylococcal nuclease]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 21:38:04 2008''