1t5k: Difference between revisions

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[[Image:1t5k.png|left|200px]]


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==Crystal structure of amicyanin substituted with cobalt==
The line below this paragraph, containing "STRUCTURE_1t5k", creates the "Structure Box" on the page.
<StructureSection load='1t5k' size='340' side='right'caption='[[1t5k]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)  
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1t5k]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Paracoccus_denitrificans Paracoccus denitrificans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T5K OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1T5K FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.4&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
{{STRUCTURE_1t5k| PDB=1t5k |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1t5k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1t5k OCA], [https://pdbe.org/1t5k PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1t5k RCSB], [https://www.ebi.ac.uk/pdbsum/1t5k PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1t5k ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/AMCY_PARDE AMCY_PARDE] Primary acceptor of electrons from methylamine dehydrogenase. Passes those electrons on either a soluble cytochrome c or to pseudoazurin.
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/t5/1t5k_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1t5k ConSurf].
<div style="clear:both"></div>


===Crystal structure of amicyanin substituted with cobalt===
==See Also==
 
*[[Amicyanin 3D structures|Amicyanin 3D structures]]
 
__TOC__
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The line below this paragraph, {{ABSTRACT_PUBMED_15260481}}, adds the Publication Abstract to the page
[[Category: Large Structures]]
(as it appears on PubMed at http://www.pubmed.gov), where 15260481 is the PubMed ID number.
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{{ABSTRACT_PUBMED_15260481}}
 
==About this Structure==
1T5K is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Paracoccus_denitrificans Paracoccus denitrificans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T5K OCA].
 
==Reference==
Crystallographic and NMR investigation of cobalt-substituted amicyanin., Carrell CJ, Wang X, Jones L, Jarrett WL, Davidson VL, Mathews FS, Biochemistry. 2004 Jul 27;43(29):9381-9. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15260481 15260481]
[[Category: Paracoccus denitrificans]]
[[Category: Paracoccus denitrificans]]
[[Category: Single protein]]
[[Category: Carrell CJ]]
[[Category: Carrell, C J.]]
[[Category: Davidson VL]]
[[Category: Davidson, V L.]]
[[Category: Jarrett WL]]
[[Category: Jarrett, W L.]]
[[Category: Jones L]]
[[Category: Jones, L.]]
[[Category: Mathews FS]]
[[Category: Mathews, F S.]]
[[Category: Wang X]]
[[Category: Wang, X.]]
[[Category: Electron transport]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 16:56:11 2008''

Latest revision as of 11:36, 14 February 2024

Crystal structure of amicyanin substituted with cobaltCrystal structure of amicyanin substituted with cobalt

Structural highlights

1t5k is a 4 chain structure with sequence from Paracoccus denitrificans. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.4Å
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

AMCY_PARDE Primary acceptor of electrons from methylamine dehydrogenase. Passes those electrons on either a soluble cytochrome c or to pseudoazurin.

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

1t5k, resolution 1.40Å

Drag the structure with the mouse to rotate

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OCA
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