2apb: Difference between revisions

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-{{Seed}}
-[[Image:2apb.png|left|200px]]
-<!--
+==Crystal Structure of the S54N variant of murine T cell receptor Vbeta 8.2 domain==
-The line below this paragraph, containing "STRUCTURE_2apb", creates the "Structure Box" on the page.
+<StructureSection load='2apb' size='340' side='right'caption='[[2apb]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[2apb]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2APB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2APB FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MLA:MALONIC+ACID'>MLA</scene></td></tr>
-{{STRUCTURE_2apb|  PDB=2apb  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2apb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2apb OCA], [https://pdbe.org/2apb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2apb RCSB], [https://www.ebi.ac.uk/pdbsum/2apb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2apb ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/A2NAI0_RAT A2NAI0_RAT]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ap/2apb_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2apb ConSurf].
+<div style="clear:both"></div>
-===Crystal Structure of the S54N variant of murine T cell receptor Vbeta 8.2 domain===
+==See Also==
+*[[T-cell receptor 3D structures|T-cell receptor 3D structures]]
+__TOC__
-==About this Structure==
+</StructureSection>
-Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2APB OCA].
+[[Category: Large Structures]]
+[[Category: Rattus norvegicus]]
-==Reference==
+[[Category: Cho S]]
-The nitty-gritty of protein interactions., Schreiber G, Structure. 2005 Dec;13(12):1737-8. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16338399 16338399]
+[[Category: Guan R]]
-[[Category: Cho, S.]]
+[[Category: Kerzic MC]]
-[[Category: Guan, R.]]
+[[Category: Kieke MC]]
-[[Category: Kerzic, M C.]]
+[[Category: Kranz DM]]
-[[Category: Kieke, M C.]]
+[[Category: Mariuzza RA]]
-[[Category: Kranz, D M.]]
+[[Category: Sundberg EJ]]
-[[Category: Mariuzza, R A.]]
+[[Category: Swaminathan CP]]
-[[Category: Sundberg, E J.]]
+[[Category: Yang J]]
-[[Category: Swaminathan, C P.]]
-[[Category: Yang, J.]]
-[[Category: T cell receptor]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 05:54:15 2008''