1nb2: Difference between revisions

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[[Image:1nb2.png|left|200px]]


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==Crystal Structure of Nucleoside Diphosphate Kinase from Bacillus Halodenitrificans==
The line below this paragraph, containing "STRUCTURE_1nb2", creates the "Structure Box" on the page.
<StructureSection load='1nb2' size='340' side='right'caption='[[1nb2]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1nb2]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Virgibacillus_halodenitrificans Virgibacillus halodenitrificans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NB2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1NB2 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1nb2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1nb2 OCA], [https://pdbe.org/1nb2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1nb2 RCSB], [https://www.ebi.ac.uk/pdbsum/1nb2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1nb2 ProSAT]</span></td></tr>
{{STRUCTURE_1nb2| PDB=1nb2 |  SCENE= }}
</table>
== Function ==
[https://www.uniprot.org/uniprot/Q7SIA9_VIRHA Q7SIA9_VIRHA] Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.[HAMAP-Rule:MF_00451]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nb/1nb2_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1nb2 ConSurf].
<div style="clear:both"></div>


===Crystal Structure of Nucleoside Diphosphate Kinase from Bacillus Halodenitrificans===
==See Also==
 
*[[Nucleoside diphosphate kinase 3D structures|Nucleoside diphosphate kinase 3D structures]]
 
__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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{{ABSTRACT_PUBMED_12713952}}
 
==About this Structure==
1NB2 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Virgibacillus_halodenitrificans Virgibacillus halodenitrificans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NB2 OCA].
 
==Reference==
Crystal structure of a nucleoside diphosphate kinase from Bacillus halodenitrificans: coexpression of its activity with a Mn-superoxide dismutase., Chen CJ, Liu MY, Chang T, Chang WC, Wang BC, Le Gall J, J Struct Biol. 2003 May;142(2):247-55. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12713952 12713952]
[[Category: Nucleoside-diphosphate kinase]]
[[Category: Single protein]]
[[Category: Virgibacillus halodenitrificans]]
[[Category: Virgibacillus halodenitrificans]]
[[Category: Chang, T.]]
[[Category: Chang T]]
[[Category: Chang, W C.]]
[[Category: Chang W-C]]
[[Category: Chen, C J.]]
[[Category: Chen C-J]]
[[Category: Gall, J Le.]]
[[Category: Le Gall J]]
[[Category: Liu, M Y.]]
[[Category: Liu M-Y]]
[[Category: Wang, B C.]]
[[Category: Wang B-C]]
[[Category: Bacillus halodenitrifian]]
[[Category: Nucleoside diphosphate kinase]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 00:54:56 2008''

Latest revision as of 16:27, 13 March 2024

Crystal Structure of Nucleoside Diphosphate Kinase from Bacillus HalodenitrificansCrystal Structure of Nucleoside Diphosphate Kinase from Bacillus Halodenitrificans

Structural highlights

1nb2 is a 1 chain structure with sequence from Virgibacillus halodenitrificans. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.2Å
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

Q7SIA9_VIRHA Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.[HAMAP-Rule:MF_00451]

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

1nb2, resolution 2.20Å

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