2hpx: Difference between revisions

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{{Seed}}
[[Image:2hpx.png|left|200px]]


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==13mer Duplex DNA containing a 4'-oxidized abasic site, averaged structure==
The line below this paragraph, containing "STRUCTURE_2hpx", creates the "Structure Box" on the page.
<StructureSection load='2hpx' size='340' side='right'caption='[[2hpx]]' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2hpx]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HPX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2HPX FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=X4A:[(2R,3S,5S)-2,3,5-TRIHYDROXYTETRAHYDROFURAN-2-YL]METHYL+DIHYDROGEN+PHOSPHATE'>X4A</scene></td></tr>
{{STRUCTURE_2hpx|  PDB=2hpx  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2hpx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hpx OCA], [https://pdbe.org/2hpx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2hpx RCSB], [https://www.ebi.ac.uk/pdbsum/2hpx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2hpx ProSAT]</span></td></tr>
 
</table>
===13mer Duplex DNA containing a 4'-oxidized abasic site, averaged structure===
__TOC__
 
</StructureSection>
 
[[Category: Large Structures]]
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[[Category: Synthetic construct]]
The line below this paragraph, {{ABSTRACT_PUBMED_17323932}}, adds the Publication Abstract to the page
[[Category: Case DA]]
(as it appears on PubMed at http://www.pubmed.gov), where 17323932 is the PubMed ID number.
[[Category: Chen J]]
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[[Category: Dupradeau FY]]
{{ABSTRACT_PUBMED_17323932}}
[[Category: Stubbe J]]
 
[[Category: Turner CJ]]
==About this Structure==
Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HPX OCA].  
 
==Reference==
Nuclear magnetic resonance structural studies and molecular modeling of duplex DNA containing normal and 4'-oxidized abasic sites., Chen J, Dupradeau FY, Case DA, Turner CJ, Stubbe J, Biochemistry. 2007 Mar 20;46(11):3096-107. Epub 2007 Feb 27. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17323932 17323932]
[[Category: Case, D A.]]
[[Category: Chen, J.]]
[[Category: Dupradeau, F Y.]]
[[Category: Stubbe, J.]]
[[Category: Turner, C J.]]
[[Category: Abasic site]]
[[Category: Bleomycin]]
[[Category: Dna damage]]
[[Category: Molecular dynamic]]
[[Category: Nmr]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 00:47:12 2008''

Latest revision as of 09:40, 1 May 2024

13mer Duplex DNA containing a 4'-oxidized abasic site, averaged structure13mer Duplex DNA containing a 4'-oxidized abasic site, averaged structure

Structural highlights

2hpx is a 2 chain structure with sequence from Synthetic construct. Full experimental information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:Solution NMR
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT
Drag the structure with the mouse to rotate

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