2eig: Difference between revisions

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-{{Seed}}
-[[Image:2eig.png|left|200px]]
-<!--
+==Lotus tetragonolobus seed lectin (Isoform)==
-The line below this paragraph, containing "STRUCTURE_2eig", creates the "Structure Box" on the page.
+<StructureSection load='2eig' size='340' side='right'caption='[[2eig]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[2eig]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Lotus_tetragonolobus Lotus tetragonolobus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EIG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2EIG FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
-{{STRUCTURE_2eig|  PDB=2eig  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2eig FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2eig OCA], [https://pdbe.org/2eig PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2eig RCSB], [https://www.ebi.ac.uk/pdbsum/2eig PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2eig ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/D0VWW1_LOTTE D0VWW1_LOTTE]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ei/2eig_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2eig ConSurf].
+<div style="clear:both"></div>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+Lotus tetragonolobus lectin (LTA) is a fucose-specific legume lectin. Although several studies report a diverse combination of biological activities for LTA, little is known about the mechanisms involved in l-fucosyl oligosaccharide recognition. The crystal structure of LTA at 2.0A resolution reveals a different legume lectin tetramer. Its structure consists of a homotetramer composed of two back-to-back GS4-like dimers arranged in a new mode, resulting in a novel tetramer. The LTA N-linked carbohydrate at Asn4 and the unusual LTA dimer-dimer interaction are related to its particular mode of tetramerization. In addition, we used small angle X-ray scattering to investigate the quaternary structure of LTA in solution and to compare it to the crystalline structure. Although the crystal structure of LTA has revealed a conserved metal-binding site, its l-fucose-binding site presents some punctual differences. Our investigation of the new tetramer of LTA and its fucose-binding site is essential for further studies related to cross-linking between LTA and complex divalent l-fucosyl carbohydrates.
-===Lotus tetragonolobus seed lectin (Isoform)===
+Identification of a new quaternary association for legume lectins.,Moreno FB, de Oliveira TM, Martil DE, Vicoti MM, Bezerra GA, Abrego JR, Cavada BS, Filgueira de Azevedo W Jr J Struct Biol. 2008 Feb;161(2):133-43. Epub 2007 Oct 15. PMID:18068379<ref>PMID:18068379</ref>
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-<!--
+</div>
-The line below this paragraph, {{ABSTRACT_PUBMED_18068379}}, adds the Publication Abstract to the page
+<div class="pdbe-citations 2eig" style="background-color:#fffaf0;"></div>
-(as it appears on PubMed at http://www.pubmed.gov), where 18068379 is the PubMed ID number.
+== References ==
--->
+<references/>
-{{ABSTRACT_PUBMED_18068379}}
+__TOC__
+</StructureSection>
-==About this Structure==
+[[Category: Large Structures]]
-EIG is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Lotus_tetragonolobus Lotus tetragonolobus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EIG OCA].
-==Reference==
-Identification of a new quaternary association for legume lectins., Moreno FB, de Oliveira TM, Martil DE, Vicoti MM, Bezerra GA, Abrego JR, Cavada BS, Filgueira de Azevedo W Jr, J Struct Biol. 2008 Feb;161(2):133-43. Epub 2007 Oct 15. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18068379 18068379]
 [[Category: Lotus tetragonolobus]]
-[[Category: Single protein]]
+[[Category: Abrego JRB]]
-[[Category: Abrego, J R.B.]]
+[[Category: Bezerra GA]]
-[[Category: Bezerra, G A.]]
+[[Category: Cavada BS]]
-[[Category: Cavada, B S.]]
+[[Category: Filgueira de Azevedo Jr W]]
-[[Category: Jr., W Filgueira de Azevedo.]]
+[[Category: Moreno FBMB]]
-[[Category: Moreno, F B.M B.]]
+[[Category: Vicoti MM]]
-[[Category: Oliveira, T M.de.]]
+[[Category: De Oliveira TM]]
-[[Category: Vicoti, M M.]]
-[[Category: L-fucosyl]]
-[[Category: Lotus tetragonolobus]]
-[[Category: N-acetyl-d-glucosamine]]
-[[Category: Sugar binding protein]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 00:40:35 2008''