2k3f: Difference between revisions

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[[Image:2k3f.png|left|200px]]


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==Ribosomal protein L11 from Thermotoga maritima==
The line below this paragraph, containing "STRUCTURE_2k3f", creates the "Structure Box" on the page.
<StructureSection load='2k3f' size='340' side='right'caption='[[2k3f]]' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2k3f]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K3F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2K3F FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2k3f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k3f OCA], [https://pdbe.org/2k3f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2k3f RCSB], [https://www.ebi.ac.uk/pdbsum/2k3f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2k3f ProSAT]</span></td></tr>
{{STRUCTURE_2k3f|  PDB=2k3f |  SCENE= }}
</table>
== Function ==
[https://www.uniprot.org/uniprot/RL11_THEMA RL11_THEMA] This protein binds directly to 23S ribosomal RNA.
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k3/2k3f_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2k3f ConSurf].
<div style="clear:both"></div>


===Ribosomal protein L11 from Thermotoga maritima===
==See Also==
 
*[[Ribosomal protein L11 3D structures|Ribosomal protein L11 3D structures]]
 
__TOC__
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</StructureSection>
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[[Category: Large Structures]]
(as it appears on PubMed at http://www.pubmed.gov), where 16094695 is the PubMed ID number.
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{{ABSTRACT_PUBMED_16094695}}
 
==About this Structure==
2K3F is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K3F OCA].
 
==Reference==
Domain reorientation and induced fit upon RNA binding: solution structure and dynamics of ribosomal protein L11 from Thermotoga maritima., Ilin S, Hoskins A, Ohlenschlager O, Jonker HR, Schwalbe H, Wohnert J, Chembiochem. 2005 Sep;6(9):1611-8. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16094695 16094695]
 
L11 domain rearrangement upon binding to RNA and thiostrepton studied by NMR spectroscopy., Jonker HR, Ilin S, Grimm SK, Wohnert J, Schwalbe H, Nucleic Acids Res. 2007;35(2):441-54. Epub 2006 Dec 14. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17169991 17169991]
[[Category: Single protein]]
[[Category: Thermotoga maritima]]
[[Category: Thermotoga maritima]]
[[Category: Ilin, S.]]
[[Category: Ilin S]]
[[Category: Jonker, H R.A.]]
[[Category: Jonker HRA]]
[[Category: Schwalbe, H.]]
[[Category: Schwalbe H]]
[[Category: Woehnert, J.]]
[[Category: Woehnert J]]
[[Category: L11]]
[[Category: Methylation]]
[[Category: Ribonucleoprotein]]
[[Category: Ribosomal protein]]
[[Category: Rna-binding]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Jul 27 22:50:27 2008''

Latest revision as of 09:43, 1 May 2024

Ribosomal protein L11 from Thermotoga maritimaRibosomal protein L11 from Thermotoga maritima

Structural highlights

2k3f is a 1 chain structure with sequence from Thermotoga maritima. Full experimental information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:Solution NMR
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

RL11_THEMA This protein binds directly to 23S ribosomal RNA.

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

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OCA
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