1kg5: Difference between revisions
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New page: left|200px<br /><applet load="1kg5" size="450" color="white" frame="true" align="right" spinBox="true" caption="1kg5, resolution 1.35Å" /> '''Crystal structure of... |
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== | ==Crystal structure of the K142Q mutant of E.coli MutY (core fragment)== | ||
<StructureSection load='1kg5' size='340' side='right'caption='[[1kg5]], [[Resolution|resolution]] 1.35Å' scene=''> | |||
== Structural highlights == | |||
<table><tr><td colspan='2'>[[1kg5]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KG5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1KG5 FirstGlance]. <br> | |||
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.35Å</td></tr> | |||
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1kg5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kg5 OCA], [https://pdbe.org/1kg5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1kg5 RCSB], [https://www.ebi.ac.uk/pdbsum/1kg5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1kg5 ProSAT]</span></td></tr> | |||
</table> | |||
== Function == | |||
[https://www.uniprot.org/uniprot/MUTY_ECOLI MUTY_ECOLI] Adenine glycosylase active on G-A mispairs. MutY also corrects error-prone DNA synthesis past GO lesions which are due to the oxidatively damaged form of guanine: 7,8-dihydro-8-oxoguanine (8-oxo-dGTP). | |||
== Evolutionary Conservation == | |||
[[Image:Consurf_key_small.gif|200px|right]] | |||
Check<jmol> | |||
<jmolCheckbox> | |||
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kg/1kg5_consurf.spt"</scriptWhenChecked> | |||
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | |||
<text>to colour the structure by Evolutionary Conservation</text> | |||
</jmolCheckbox> | |||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1kg5 ConSurf]. | |||
<div style="clear:both"></div> | |||
==See Also== | |||
*[[DNA glycosylase 3D structures|DNA glycosylase 3D structures]] | |||
__TOC__ | |||
</StructureSection> | |||
[[Category: Escherichia coli]] | [[Category: Escherichia coli]] | ||
[[Category: | [[Category: Large Structures]] | ||
[[Category: Gerchman | [[Category: Gerchman SE]] | ||
[[Category: Gilboa | [[Category: Gilboa R]] | ||
[[Category: Grollman | [[Category: Grollman AP]] | ||
[[Category: Kilshtein | [[Category: Kilshtein A]] | ||
[[Category: Kycia | [[Category: Kycia JH]] | ||
[[Category: Shoham | [[Category: Shoham G]] | ||
[[Category: Zharkov | [[Category: Zharkov DO]] | ||
Latest revision as of 11:58, 16 August 2023
Crystal structure of the K142Q mutant of E.coli MutY (core fragment)Crystal structure of the K142Q mutant of E.coli MutY (core fragment)
Structural highlights
FunctionMUTY_ECOLI Adenine glycosylase active on G-A mispairs. MutY also corrects error-prone DNA synthesis past GO lesions which are due to the oxidatively damaged form of guanine: 7,8-dihydro-8-oxoguanine (8-oxo-dGTP). Evolutionary Conservation Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf. See Also |
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