1x9l: Difference between revisions

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-{{Seed}}
-[[Image:1x9l.png|left|200px]]
-<!--
+==Solution structure of CuI-DR1885 from Deinococcus Radiodurans==
-The line below this paragraph, containing "STRUCTURE_1x9l", creates the "Structure Box" on the page.
+<StructureSection load='1x9l' size='340' side='right'caption='[[1x9l]]' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1x9l]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Deinococcus_radiodurans_R1 Deinococcus radiodurans R1]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X9L OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1X9L FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU1:COPPER+(I)+ION'>CU1</scene></td></tr>
-{{STRUCTURE_1x9l|  PDB=1x9l  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1x9l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1x9l OCA], [https://pdbe.org/1x9l PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1x9l RCSB], [https://www.ebi.ac.uk/pdbsum/1x9l PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1x9l ProSAT]</span></td></tr>
+</table>
-===Solution structure of CuI-DR1885 from Deinococcus Radiodurans===
+== Function ==
+[https://www.uniprot.org/uniprot/Q9RT80_DEIRA Q9RT80_DEIRA]
+== Evolutionary Conservation ==
-<!--
+[[Image:Consurf_key_small.gif|200px|right]]
-The line below this paragraph, {{ABSTRACT_PUBMED_15753304}}, adds the Publication Abstract to the page
+Check<jmol>
-(as it appears on PubMed at http://www.pubmed.gov), where 15753304 is the PubMed ID number.
+  <jmolCheckbox>
--->
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/x9/1x9l_consurf.spt"</scriptWhenChecked>
-{{ABSTRACT_PUBMED_15753304}}
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
-==About this Structure==
+  </jmolCheckbox>
-X9L is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Deinococcus_radiodurans_r1 Deinococcus radiodurans r1]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X9L OCA].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1x9l ConSurf].
+<div style="clear:both"></div>
-==Reference==
+__TOC__
-A copper(I) protein possibly involved in the assembly of CuA center of bacterial cytochrome c oxidase., Banci L, Bertini I, Ciofi-Baffoni S, Katsari E, Katsaros N, Kubicek K, Mangani S, Proc Natl Acad Sci U S A. 2005 Mar 15;102(11):3994-9. Epub 2005 Mar 7. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15753304 15753304]
+</StructureSection>
-[[Category: Deinococcus radiodurans r1]]
+[[Category: Deinococcus radiodurans R1]]
-[[Category: Single protein]]
+[[Category: Large Structures]]
-[[Category: Banci, L.]]
+[[Category: Banci L]]
-[[Category: Bertini, I.]]
+[[Category: Bertini I]]
-[[Category: Ciofi-Baffoni, S.]]
+[[Category: Ciofi-Baffoni S]]
-[[Category: Katsari, E.]]
+[[Category: Katsari E]]
-[[Category: Katsaros, N.]]
+[[Category: Katsaros N]]
-[[Category: Kubicek, K.]]
+[[Category: Kubicek K]]
-[[Category: SPINE, Structural Proteomics in Europe.]]
-[[Category: Copper binding protein]]
-[[Category: Deinococcus radioduran]]
-[[Category: Holo-form]]
-[[Category: Nmr]]
-[[Category: Solution structure]]
-[[Category: Spine]]
-[[Category: Structural genomic]]
-[[Category: Structural proteomics in europe]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Jul 27 15:45:39 2008''