3d3y: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
← Older edit
No edit summary
No edit summary
 
(8 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{Seed}}
[[Image:3d3y.jpg|left|200px]]


<!--
==Crystal structure of a conserved protein from Enterococcus faecalis V583==
The line below this paragraph, containing "STRUCTURE_3d3y", creates the "Structure Box" on the page.
<StructureSection load='3d3y' size='340' side='right'caption='[[3d3y]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3d3y]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Enterococcus_faecalis_V583 Enterococcus faecalis V583]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D3Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3D3Y FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
{{STRUCTURE_3d3y|  PDB=3d3y  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3d3y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d3y OCA], [https://pdbe.org/3d3y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3d3y RCSB], [https://www.ebi.ac.uk/pdbsum/3d3y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3d3y ProSAT], [https://www.topsan.org/Proteins/MCSG/3d3y TOPSAN]</span></td></tr>
 
</table>
===Crystal structure of a conserved protein from Enterococcus faecalis V583===
== Function ==
 
[https://www.uniprot.org/uniprot/Q82ZB5_ENTFA Q82ZB5_ENTFA]  
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
3D3Y is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Enterococcus_faecalis_v583 Enterococcus faecalis v583]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D3Y OCA].  
Check<jmol>
[[Category: Enterococcus faecalis v583]]
  <jmolCheckbox>
[[Category: Single protein]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d3/3d3y_consurf.spt"</scriptWhenChecked>
[[Category: Clancy, S.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: Joachimiak, A.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Li, H.]]
  </jmolCheckbox>
[[Category: MCSG, Midwest Center for Structural Genomics.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3d3y ConSurf].
[[Category: Tan, K.]]
<div style="clear:both"></div>
[[Category: Apc29635]]
__TOC__
[[Category: Conserved protein]]
</StructureSection>
[[Category: Enterococcus faecalis v583]]
[[Category: Enterococcus faecalis V583]]
[[Category: Mcsg]]
[[Category: Large Structures]]
[[Category: Midwest center for structural genomic]]
[[Category: Clancy S]]
[[Category: Protein structure initiative]]
[[Category: Joachimiak A]]
[[Category: Psi-2]]
[[Category: Li H]]
[[Category: Structural genomic]]
[[Category: Tan K]]
[[Category: Unknown function]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 16 10:49:14 2008''

Latest revision as of 11:57, 30 October 2024

Crystal structure of a conserved protein from Enterococcus faecalis V583Crystal structure of a conserved protein from Enterococcus faecalis V583

Structural highlights

3d3y is a 1 chain structure with sequence from Enterococcus faecalis V583. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.95Å
Ligands:, ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

Q82ZB5_ENTFA

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

3d3y, resolution 1.95Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
Retrieved from "https://proteopedia.openfox.io/wiki/index.php?title=3d3y&oldid=4205795"