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New page: '''Unreleased structure''' The entry 3dmi is ON HOLD Authors: Akazaki, H., Kawai, F., Hosokawa, M., Hama, T., Hirano, T., Lim, B.-K., Sakurai, N., Hakamata, W., Park, S.-Y., Nishio, T.,... |
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==Crystallization and Structural Analysis of Cytochrome c6 from the Diatom Phaeodactylum tricornutum at 1.5 A resolution== | |||
<StructureSection load='3dmi' size='340' side='right'caption='[[3dmi]], [[Resolution|resolution]] 1.50Å' scene=''> | |||
== Structural highlights == | |||
<table><tr><td colspan='2'>[[3dmi]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Phaeodactylum_tricornutum Phaeodactylum tricornutum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DMI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DMI FirstGlance]. <br> | |||
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5Å</td></tr> | |||
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dmi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dmi OCA], [https://pdbe.org/3dmi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dmi RCSB], [https://www.ebi.ac.uk/pdbsum/3dmi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dmi ProSAT]</span></td></tr> | |||
</table> | |||
== Function == | |||
[https://www.uniprot.org/uniprot/Q8GTB5_PHATR Q8GTB5_PHATR] | |||
== Evolutionary Conservation == | |||
[[Image:Consurf_key_small.gif|200px|right]] | |||
Check<jmol> | |||
<jmolCheckbox> | |||
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dm/3dmi_consurf.spt"</scriptWhenChecked> | |||
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked> | |||
<text>to colour the structure by Evolutionary Conservation</text> | |||
</jmolCheckbox> | |||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dmi ConSurf]. | |||
<div style="clear:both"></div> | |||
<div style="background-color:#fffaf0;"> | |||
== Publication Abstract from PubMed == | |||
We determined for the first time the crystal structure of diatom cytochrome c(6) from Phaeodactylum tricornutum at 1.5 A resolution. The overall structure of the protein was classified as a class I c-type cytochrome. The physicochemical properties of the protein were examined by denaturation with guanidine hydrochloride and urea, and compared with those of other algal cytochrome c(6). | |||
Crystallization and structural analysis of cytochrome c(6) from the diatom Phaeodactylum tricornutum at 1.5 A resolution.,Akazaki H, Kawai F, Hosokawa M, Hama T, Chida H, Hirano T, Lim BK, Sakurai N, Hakamata W, Park SY, Nishio T, Oku T Biosci Biotechnol Biochem. 2009 Jan;73(1):189-91. Epub 2009 Jan 7. PMID:19129656<ref>PMID:19129656</ref> | |||
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |||
</div> | |||
<div class="pdbe-citations 3dmi" style="background-color:#fffaf0;"></div> | |||
== References == | |||
<references/> | |||
__TOC__ | |||
</StructureSection> | |||
[[Category: Large Structures]] | |||
[[Category: Phaeodactylum tricornutum]] | |||
[[Category: Akazaki H]] | |||
[[Category: Hakamata W]] | |||
[[Category: Hama T]] | |||
[[Category: Hirano T]] | |||
[[Category: Hosokawa M]] | |||
[[Category: Kawai F]] | |||
[[Category: Lim B-K]] | |||
[[Category: Nishio T]] | |||
[[Category: Oku T]] | |||
[[Category: Park S-Y]] | |||
[[Category: Sakurai N]] | |||
Latest revision as of 08:46, 17 October 2024
Crystallization and Structural Analysis of Cytochrome c6 from the Diatom Phaeodactylum tricornutum at 1.5 A resolutionCrystallization and Structural Analysis of Cytochrome c6 from the Diatom Phaeodactylum tricornutum at 1.5 A resolution
Structural highlights
FunctionEvolutionary Conservation Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf. Publication Abstract from PubMedWe determined for the first time the crystal structure of diatom cytochrome c(6) from Phaeodactylum tricornutum at 1.5 A resolution. The overall structure of the protein was classified as a class I c-type cytochrome. The physicochemical properties of the protein were examined by denaturation with guanidine hydrochloride and urea, and compared with those of other algal cytochrome c(6). Crystallization and structural analysis of cytochrome c(6) from the diatom Phaeodactylum tricornutum at 1.5 A resolution.,Akazaki H, Kawai F, Hosokawa M, Hama T, Chida H, Hirano T, Lim BK, Sakurai N, Hakamata W, Park SY, Nishio T, Oku T Biosci Biotechnol Biochem. 2009 Jan;73(1):189-91. Epub 2009 Jan 7. PMID:19129656[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. References
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