1j7b: Difference between revisions

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New page: left|200px<br /><applet load="1j7b" size="450" color="white" frame="true" align="right" spinBox="true" caption="1j7b, resolution 1.8Å" /> '''STRUCTURE OF THE ANAB...
 
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'''STRUCTURE OF THE ANABAENA FERREDOXIN MUTANT E94K'''<br />


==Overview==
==STRUCTURE OF THE ANABAENA FERREDOXIN MUTANT E94K==
A combination of structural, thermodynamic, and transient kinetic data on, wild-type and mutant Anabaena vegetative cell ferredoxins has been used to, investigate the nature of the protein-protein interactions leading to, electron transfer from reduced ferredoxin to oxidized ferredoxin:NADP+, reductase (FNR). We have determined the reduction potentials of wild-type, vegetative ferredoxin, heterocyst ferredoxin, and 12 site-specific mutants, at seven surface residues of vegetative ferredoxin, as well as the one-, and two-electron reduction potentials of FNR, both alone and in complexes, with wild-type and three mutant ferredoxins. X-ray crystallographic, structure determinations have been carried out for six of the ferredoxin, mutants. None of the mutants showed significant structural changes in the, immediate vicinity of the [2Fe-2S] cluster, despite large decreases in, electron-transfer reactivity (for E94K and S47A) and sizable increases in, reduction potential (80 mV for E94K and 47 mV for S47A). Furthermore, the, relatively small changes in Calpha backbone atom positions which were, observed in these mutants do not correlate with the kinetic and, thermodynamic properties. In sharp contrast to the S47A mutant, S47T, retains electron-transfer activity, and its reduction potential is 100 mV, more negative than that of the S47A mutant, implicating the importance of, the hydrogen bond which exists between the side chain hydroxyl group of, S47 and the side chain carboxyl oxygen of E94. Other ferredoxin mutations, that alter both reduction potential and electron-transfer reactivity are, E94Q, F65A, and F65I, whereas D62K, D68K, Q70K, E94D, and F65Y have, reduction potentials and electron-transfer reactivity that are similar to, those of wild-type ferredoxin. In electrostatic complexes with recombinant, FNR, three of the kinetically impaired ferredoxin mutants, as did, wild-type ferredoxin, induced large (approximately 40 mV) positive shifts, in the reduction potential of the flavoprotein, thereby making electron, transfer thermodynamically feasible. On the basis of these observations, we conclude that nonconservative mutations of three critical residues, (S47, F65, and E94) on the surface of ferredoxin have large parallel, effects on both the reduction potential and the electron-transfer, reactivity of the [2Fe-2S] cluster and that the reduction potential, changes are not the principal factor governing electron-transfer, reactivity. Rather, the kinetic properties are most likely controlled by, the specific orientations of the proteins within the transient, electron-transfer complex.
<StructureSection load='1j7b' size='340' side='right'caption='[[1j7b]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[1j7b]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Nostoc_sp._PCC_7120_=_FACHB-418 Nostoc sp. PCC 7120 = FACHB-418]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1qod 1qod]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J7B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1J7B FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1j7b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1j7b OCA], [https://pdbe.org/1j7b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1j7b RCSB], [https://www.ebi.ac.uk/pdbsum/1j7b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1j7b ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/FER1_NOSS1 FER1_NOSS1] Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/j7/1j7b_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1j7b ConSurf].
<div style="clear:both"></div>


==About this Structure==
==See Also==
1J7B is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Anabaena_sp. Anabaena sp.] with FES as [http://en.wikipedia.org/wiki/ligand ligand]. This structure superseeds the now removed PDB entry 1QOD. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1J7B OCA].
*[[Ferredoxin 3D structures|Ferredoxin 3D structures]]
 
__TOC__
==Reference==
</StructureSection>
Structure-function relationships in Anabaena ferredoxin: correlations between X-ray crystal structures, reduction potentials, and rate constants of electron transfer to ferredoxin:NADP+ reductase for site-specific ferredoxin mutants., Hurley JK, Weber-Main AM, Stankovich MT, Benning MM, Thoden JB, Vanhooke JL, Holden HM, Chae YK, Xia B, Cheng H, Markley JL, Martinez-Julvez M, Gomez-Moreno C, Schmeits JL, Tollin G, Biochemistry. 1997 Sep 16;36(37):11100-17. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=9287153 9287153]
[[Category: Large Structures]]
[[Category: Anabaena sp.]]
[[Category: Nostoc sp. PCC 7120 = FACHB-418]]
[[Category: Single protein]]
[[Category: Benning MM]]
[[Category: Benning, M.M.]]
[[Category: Chae YK]]
[[Category: Chae, Y.K.]]
[[Category: Cheng H]]
[[Category: Cheng, H.]]
[[Category: Gomez-Moreno C]]
[[Category: Gomez-Moreno, C.]]
[[Category: Holden HM]]
[[Category: Holden, H.M.]]
[[Category: Hurley JK]]
[[Category: Hurley, J.K.]]
[[Category: Markley JL]]
[[Category: Markley, J.L.]]
[[Category: Martinez-Julvez M]]
[[Category: Martinez-Julvez, M.]]
[[Category: Schmeits JL]]
[[Category: Schmeits, J.L.]]
[[Category: Stankovich MT]]
[[Category: Stankovich, M.T.]]
[[Category: Thoden JB]]
[[Category: Thoden, J.B.]]
[[Category: Tollin G]]
[[Category: Tollin, G.]]
[[Category: Vanhooke JL]]
[[Category: Vanhooke, J.L.]]
[[Category: Weber-Main AM]]
[[Category: Weber-Main, A.M.]]
[[Category: Xia B]]
[[Category: Xia, B.]]
[[Category: FES]]
[[Category: electron transport]]
[[Category: ferredoxin]]
[[Category: iron sulfur]]
 
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 17:59:05 2007''

Latest revision as of 10:37, 7 February 2024

STRUCTURE OF THE ANABAENA FERREDOXIN MUTANT E94KSTRUCTURE OF THE ANABAENA FERREDOXIN MUTANT E94K

Structural highlights

1j7b is a 1 chain structure with sequence from Nostoc sp. PCC 7120 = FACHB-418. This structure supersedes the now removed PDB entry 1qod. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.8Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

FER1_NOSS1 Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

1j7b, resolution 1.80Å

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