3mds: Difference between revisions

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-{{Seed}}
-[[Image:3mds.png|left|200px]]
-<!--
+==MAGANESE SUPEROXIDE DISMUTASE FROM THERMUS THERMOPHILUS==
-The line below this paragraph, containing "STRUCTURE_3mds", creates the "Structure Box" on the page.
+<StructureSection load='3mds' size='340' side='right'caption='[[3mds]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3mds]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MDS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3MDS FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MN3:MANGANESE+(III)+ION'>MN3</scene></td></tr>
-{{STRUCTURE_3mds|  PDB=3mds  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3mds FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3mds OCA], [https://pdbe.org/3mds PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3mds RCSB], [https://www.ebi.ac.uk/pdbsum/3mds PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3mds ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/SODM_THET8 SODM_THET8] Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems.
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/md/3mds_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3mds ConSurf].
+<div style="clear:both"></div>
-===MAGANESE SUPEROXIDE DISMUTASE FROM THERMUS THERMOPHILUS===
+==See Also==
+*[[Superoxide dismutase 3D structures|Superoxide dismutase 3D structures]]
+__TOC__
-<!--
+</StructureSection>
-The line below this paragraph, {{ABSTRACT_PUBMED_2038060}}, adds the Publication Abstract to the page
+[[Category: Large Structures]]
-(as it appears on PubMed at http://www.pubmed.gov), where 2038060 is the PubMed ID number.
--->
-{{ABSTRACT_PUBMED_2038060}}
-==About this Structure==
-MDS is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MDS OCA].
-==Reference==
-Manganese superoxide dismutase from Thermus thermophilus. A structural model refined at 1.8 A resolution., Ludwig ML, Metzger AL, Pattridge KA, Stallings WC, J Mol Biol. 1991 May 20;219(2):335-58. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/2038060 2038060]
-[[Category: Single protein]]
-[[Category: Superoxide dismutase]]
 [[Category: Thermus thermophilus]]
-[[Category: Ludwig, M L.]]
+[[Category: Ludwig ML]]
-[[Category: Metzger, A L.]]
+[[Category: Metzger AL]]
-[[Category: Pattridge, K A.]]
+[[Category: Pattridge KA]]
-[[Category: Stallings, W C.]]
+[[Category: Stallings WC]]
-[[Category: Oxidoreductase]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Jul  3 12:55:47 2008''