1m15: Difference between revisions

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[[Image:1m15.png|left|200px]]


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==Transition state structure of arginine kinase==
The line below this paragraph, containing "STRUCTURE_1m15", creates the "Structure Box" on the page.
<StructureSection load='1m15' size='340' side='right'caption='[[1m15]], [[Resolution|resolution]] 1.20&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1m15]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Limulus_polyphemus Limulus polyphemus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1M15 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1M15 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.2&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=ARG:ARGININE'>ARG</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene></td></tr>
{{STRUCTURE_1m15|  PDB=1m15 |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1m15 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1m15 OCA], [https://pdbe.org/1m15 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1m15 RCSB], [https://www.ebi.ac.uk/pdbsum/1m15 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1m15 ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/KARG_LIMPO KARG_LIMPO]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/m1/1m15_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1m15 ConSurf].
<div style="clear:both"></div>


===TRANSITION STATE STRUCTURE OF ARGININE KINASE===
==See Also==
 
*[[Arginine kinase 3D structures|Arginine kinase 3D structures]]
 
__TOC__
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</StructureSection>
The line below this paragraph, {{ABSTRACT_PUBMED_12454458}}, adds the Publication Abstract to the page
[[Category: Large Structures]]
(as it appears on PubMed at http://www.pubmed.gov), where 12454458 is the PubMed ID number.
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{{ABSTRACT_PUBMED_12454458}}
 
==About this Structure==
1M15 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Limulus_polyphemus Limulus polyphemus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1M15 OCA].
 
==Reference==
Refinement of the arginine kinase transition-state analogue complex at 1.2 A resolution: mechanistic insights., Yousef MS, Fabiola F, Gattis JL, Somasundaram T, Chapman MS, Acta Crystallogr D Biol Crystallogr. 2002 Dec;58(Pt 12):2009-17. Epub 2002, Nov 23. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12454458 12454458]
[[Category: Limulus polyphemus]]
[[Category: Limulus polyphemus]]
[[Category: Single protein]]
[[Category: Chapman MS]]
[[Category: Transferase]]
[[Category: Fabiola F]]
[[Category: Chapman, M S.]]
[[Category: Gattis JL]]
[[Category: Fabiola, F.]]
[[Category: Somasundaram T]]
[[Category: Gattis, J L.]]
[[Category: Yousef MS]]
[[Category: Somasundaram, T.]]
[[Category: Yousef, M S.]]
[[Category: Adenosine triphosphate]]
[[Category: Arginine kinase]]
[[Category: Creatine kinase]]
[[Category: Phosphagen kinase]]
[[Category: Transition state analog]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul  2 22:59:29 2008''

Latest revision as of 10:38, 14 February 2024

Transition state structure of arginine kinaseTransition state structure of arginine kinase

Structural highlights

1m15 is a 1 chain structure with sequence from Limulus polyphemus. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.2Å
Ligands:, , ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

KARG_LIMPO

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

1m15, resolution 1.20Å

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