1lk5: Difference between revisions

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{{Seed}}
[[Image:1lk5.png|left|200px]]


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==Structure of the D-Ribose-5-Phosphate Isomerase from Pyrococcus horikoshii==
The line below this paragraph, containing "STRUCTURE_1lk5", creates the "Structure Box" on the page.
<StructureSection load='1lk5' size='340' side='right'caption='[[1lk5]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1lk5]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LK5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1LK5 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.75&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
{{STRUCTURE_1lk5| PDB=1lk5 |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1lk5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1lk5 OCA], [https://pdbe.org/1lk5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1lk5 RCSB], [https://www.ebi.ac.uk/pdbsum/1lk5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1lk5 ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/RPIA_PYRHO RPIA_PYRHO]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/lk/1lk5_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1lk5 ConSurf].
<div style="clear:both"></div>


===Structure of the D-Ribose-5-Phosphate Isomerase from Pyrococcus horikoshii===
==See Also==
 
*[[Ribose-5-phosphate isomerase 3D structures|Ribose-5-phosphate isomerase 3D structures]]
 
__TOC__
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</StructureSection>
The line below this paragraph, {{ABSTRACT_PUBMED_12057201}}, adds the Publication Abstract to the page
[[Category: Large Structures]]
(as it appears on PubMed at http://www.pubmed.gov), where 12057201 is the PubMed ID number.
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{{ABSTRACT_PUBMED_12057201}}
 
==About this Structure==
1LK5 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LK5 OCA].
 
==Reference==
A hyperthermostable D-ribose-5-phosphate isomerase from Pyrococcus horikoshii characterization and three-dimensional structure., Ishikawa K, Matsui I, Payan F, Cambillau C, Ishida H, Kawarabayasi Y, Kikuchi H, Roussel A, Structure. 2002 Jun;10(6):877-86. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12057201 12057201]
[[Category: Pyrococcus horikoshii]]
[[Category: Pyrococcus horikoshii]]
[[Category: Ribose-5-phosphate isomerase]]
[[Category: Cambillau C]]
[[Category: Single protein]]
[[Category: Ishida H]]
[[Category: Cambillau, C.]]
[[Category: Ishikawa K]]
[[Category: Ishida, H.]]
[[Category: Kawarabayasi Y]]
[[Category: Ishikawa, K.]]
[[Category: Kikuchi H]]
[[Category: Kawarabayasi, Y.]]
[[Category: Matsui I]]
[[Category: Kikuchi, H.]]
[[Category: Payan F]]
[[Category: Matsui, I.]]
[[Category: Roussel A]]
[[Category: Payan, F.]]
[[Category: Roussel, A.]]
[[Category: Alpha/beta structure]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul  2 21:16:52 2008''

Latest revision as of 16:26, 13 March 2024

Structure of the D-Ribose-5-Phosphate Isomerase from Pyrococcus horikoshiiStructure of the D-Ribose-5-Phosphate Isomerase from Pyrococcus horikoshii

Structural highlights

1lk5 is a 4 chain structure with sequence from Pyrococcus horikoshii. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.75Å
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

RPIA_PYRHO

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

1lk5, resolution 1.75Å

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