1kdj: Difference between revisions

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-{{Seed}}
-[[Image:1kdj.png|left|200px]]
-<!--
+==OXIDIZED FORM OF PLASTOCYANIN FROM DRYOPTERIS CRASSIRHIZOMA==
-The line below this paragraph, containing "STRUCTURE_1kdj", creates the "Structure Box" on the page.
+<StructureSection load='1kdj' size='340' side='right'caption='[[1kdj]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1kdj]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Adiantum_capillus-veneris Adiantum capillus-veneris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KDJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1KDJ FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene></td></tr>
-{{STRUCTURE_1kdj|  PDB=1kdj  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1kdj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kdj OCA], [https://pdbe.org/1kdj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1kdj RCSB], [https://www.ebi.ac.uk/pdbsum/1kdj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1kdj ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/PLAS_DRYCA PLAS_DRYCA] Participates in electron transfer between P700 and the cytochrome b6-f complex in photosystem I.
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kd/1kdj_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1kdj ConSurf].
+<div style="clear:both"></div>
-===OXIDIZED FORM OF PLASTOCYANIN FROM DRYOPTERIS CRASSIRHIZOMA===
+==See Also==
+*[[Plastocyanin 3D structures|Plastocyanin 3D structures]]
+__TOC__
-<!--
+</StructureSection>
-The line below this paragraph, {{ABSTRACT_PUBMED_10206999}}, adds the Publication Abstract to the page
+[[Category: Adiantum capillus-veneris]]
-(as it appears on PubMed at http://www.pubmed.gov), where 10206999 is the PubMed ID number.
+[[Category: Large Structures]]
--->
+[[Category: Gotowda M]]
-{{ABSTRACT_PUBMED_10206999}}
+[[Category: Hamada K]]
+[[Category: Inoue T]]
-==About this Structure==
+[[Category: Kai Y]]
-KDJ is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Eukaryota Eukaryota]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KDJ OCA].
+[[Category: Kohzuma T]]
+[[Category: Sugimura Y]]
-==Reference==
+[[Category: Yoshizaki F]]
-The structure and unusual pH dependence of plastocyanin from the fern Dryopteris crassirhizoma. The protonation of an active site histidine is hindered by pi-pi interactions., Kohzuma T, Inoue T, Yoshizaki F, Sasakawa Y, Onodera K, Nagatomo S, Kitagawa T, Uzawa S, Isobe Y, Sugimura Y, Gotowda M, Kai Y, J Biol Chem. 1999 Apr 23;274(17):11817-23. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/10206999 10206999]
-[[Category: Eukaryota]]
-[[Category: Single protein]]
-[[Category: Gotowda, M.]]
-[[Category: Hamada, K.]]
-[[Category: Inoue, T.]]
-[[Category: Kai, Y.]]
-[[Category: Kohzuma, T.]]
-[[Category: Sugimura, Y.]]
-[[Category: Yoshizaki, F.]]
-[[Category: Electron transfer]]
-[[Category: Pai-pai stacking]]
-[[Category: Photosystem]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul  2 10:10:26 2008''