1f15: Difference between revisions

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[[Image:1f15.png|left|200px]]


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==CUCUMBER MOSAIC VIRUS (STRAIN FNY)==
The line below this paragraph, containing "STRUCTURE_1f15", creates the "Structure Box" on the page.
<StructureSection load='1f15' size='340' side='right'caption='[[1f15]], [[Resolution|resolution]] 3.20&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)  
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1f15]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Cucumber_mosaic_virus_(strain_FNY) Cucumber mosaic virus (strain FNY)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1F15 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1F15 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.2&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1f15 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1f15 OCA], [https://pdbe.org/1f15 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1f15 RCSB], [https://www.ebi.ac.uk/pdbsum/1f15 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1f15 ProSAT]</span></td></tr>
{{STRUCTURE_1f15| PDB=1f15 |  SCENE= }}
</table>
== Function ==
[https://www.uniprot.org/uniprot/CAPSD_CMVFN CAPSD_CMVFN] Capsid protein. Probably binds RNA and plays a role in packaging (By similarity).
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/f1/1f15_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1f15 ConSurf].
<div style="clear:both"></div>


===CUCUMBER MOSAIC VIRUS (STRAIN FNY)===
==See Also==
 
*[[Virus coat proteins 3D structures|Virus coat proteins 3D structures]]
 
__TOC__
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</StructureSection>
The line below this paragraph, {{ABSTRACT_PUBMED_10906212}}, adds the Publication Abstract to the page
[[Category: Large Structures]]
(as it appears on PubMed at http://www.pubmed.gov), where 10906212 is the PubMed ID number.
[[Category: Chase E]]
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[[Category: Perry K]]
{{ABSTRACT_PUBMED_10906212}}
[[Category: Schmidt T]]
 
[[Category: Smith TJ]]
==About this Structure==
1F15 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Cucumber_mosaic_virus Cucumber mosaic virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1F15 OCA].
 
==Reference==
The structure of cucumber mosaic virus and comparison to cowpea chlorotic mottle virus., Smith TJ, Chase E, Schmidt T, Perry KL, J Virol. 2000 Aug;74(16):7578-86. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/10906212 10906212]
[[Category: Cucumber mosaic virus]]
[[Category: Single protein]]
[[Category: Chase, E.]]
[[Category: Perry, K.]]
[[Category: Schmidt, T.]]
[[Category: Smith, T J.]]
[[Category: Beta barrel]]
[[Category: Icosahedral virus]]
[[Category: Virus]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul  1 02:19:44 2008''

Latest revision as of 10:09, 7 February 2024

CUCUMBER MOSAIC VIRUS (STRAIN FNY)CUCUMBER MOSAIC VIRUS (STRAIN FNY)

Structural highlights

1f15 is a 3 chain structure with sequence from Cucumber mosaic virus (strain FNY). Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 3.2Å
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

CAPSD_CMVFN Capsid protein. Probably binds RNA and plays a role in packaging (By similarity).

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

1f15, resolution 3.20Å

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Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
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