1fj6: Difference between revisions

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-[[Image:1fj6.jpg|left|200px]]<br /><applet load="1fj6" size="450" color="white" frame="true" align="right" spinBox="true"
-caption="1fj6, resolution 2.5&Aring;" />
-'''FRUCTOSE-1,6-BISPHOSPHATASE (MUTANT Y57W) PRODUCT/ZN COMPLEX (R-STATE)'''<br />
-==Overview==
+==FRUCTOSE-1,6-BISPHOSPHATASE (MUTANT Y57W) PRODUCT/ZN COMPLEX (R-STATE)==
-Wild-type porcine fructose-1,6-bisphosphatase (FBPase) has no tryptophan, residues. Hence, the mutation of Try57 to tryptophan places a unique, fluorescent probe in the structural element (loop 52-72) putatively, responsible for allosteric regulation of catalysis. On the basis of, steady-state kinetics, circular dichroism spectroscopy, and X-ray, crystallography, the mutation has little effect on the functional and, structural properties of the enzyme. Fluorescence intensity from the Trp57, mutant is maximal in the presence of divalent cations, fructose, 6-phosphate and orthophosphate, which together stabilize an R-state, conformation in which loop 52-72 is engaged with the active site. The, level of fluorescence emission decreases monotonically with increasing, levels of AMP, an allosteric inhibitor, which promotes the T-state, disengaged-loop conformation. The titration of various metal-product, complexes of the Trp57 mutant with fructose 2,6-bisphosphate (F26P(2)), causes similar decreases in fluorescence, suggesting that F26P(2) and AMP, individually induce similar conformational states in FBPase. Fluorescence, spectra, however, are sensitive to the type of divalent cation (Zn(2+), Mn(2+), or Mg(2+)) and suggest conformations in addition to the R-state, loop-engaged and T-state, loop-disengaged forms of FBPase. The work, presented here demonstrates the utility of fluorescence spectroscopy in, probing the conformational dynamics of FBPase.
+<StructureSection load='1fj6' size='340' side='right'caption='[[1fj6]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[1fj6]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Sus_scrofa Sus scrofa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FJ6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1FJ6 FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=F6P:FRUCTOSE-6-PHOSPHATE'>F6P</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1fj6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fj6 OCA], [https://pdbe.org/1fj6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1fj6 RCSB], [https://www.ebi.ac.uk/pdbsum/1fj6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1fj6 ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/F16P1_PIG F16P1_PIG]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fj/1fj6_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1fj6 ConSurf].
+<div style="clear:both"></div>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+Wild-type porcine fructose-1,6-bisphosphatase (FBPase) has no tryptophan residues. Hence, the mutation of Try57 to tryptophan places a unique fluorescent probe in the structural element (loop 52-72) putatively responsible for allosteric regulation of catalysis. On the basis of steady-state kinetics, circular dichroism spectroscopy, and X-ray crystallography, the mutation has little effect on the functional and structural properties of the enzyme. Fluorescence intensity from the Trp57 mutant is maximal in the presence of divalent cations, fructose 6-phosphate and orthophosphate, which together stabilize an R-state conformation in which loop 52-72 is engaged with the active site. The level of fluorescence emission decreases monotonically with increasing levels of AMP, an allosteric inhibitor, which promotes the T-state, disengaged-loop conformation. The titration of various metal-product complexes of the Trp57 mutant with fructose 2,6-bisphosphate (F26P(2)) causes similar decreases in fluorescence, suggesting that F26P(2) and AMP individually induce similar conformational states in FBPase. Fluorescence spectra, however, are sensitive to the type of divalent cation (Zn(2+), Mn(2+), or Mg(2+)) and suggest conformations in addition to the R-state, loop-engaged and T-state, loop-disengaged forms of FBPase. The work presented here demonstrates the utility of fluorescence spectroscopy in probing the conformational dynamics of FBPase.
-==About this Structure==
+Tryptophan fluorescence reveals the conformational state of a dynamic loop in recombinant porcine fructose-1,6-bisphosphatase.,Nelson SW, Iancu CV, Choe JY, Honzatko RB, Fromm HJ Biochemistry. 2000 Sep 12;39(36):11100-6. PMID:10998248<ref>PMID:10998248</ref>
-FJ6 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Sus_scrofa Sus scrofa] with F6P, ZN and PO4 as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Fructose-bisphosphatase Fructose-bisphosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.11 3.1.3.11] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1FJ6 OCA].
-==Reference==
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-Tryptophan fluorescence reveals the conformational state of a dynamic loop in recombinant porcine fructose-1,6-bisphosphatase., Nelson SW, Iancu CV, Choe JY, Honzatko RB, Fromm HJ, Biochemistry. 2000 Sep 12;39(36):11100-6. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=10998248 10998248]
+</div>
-[[Category: Fructose-bisphosphatase]]
+<div class="pdbe-citations 1fj6" style="background-color:#fffaf0;"></div>
-[[Category: Single protein]]
+==See Also==
+*[[Fructose-1%2C6-bisphosphatase 3D structures|Fructose-1%2C6-bisphosphatase 3D structures]]
+== References ==
+<references/>
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
 [[Category: Sus scrofa]]
-[[Category: Choe, J.Y.]]
+[[Category: Choe JY]]
-[[Category: Honzatko, R.B.]]
+[[Category: Honzatko RB]]
-[[Category: Iancu, C.V.]]
+[[Category: Iancu CV]]
-[[Category: F6P]]
-[[Category: PO4]]
-[[Category: ZN]]
-[[Category: allosteric enzymes]]
-[[Category: bisphosphatase]]
-[[Category: gluconeogenesis]]
-''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 14:57:51 2007''