1duk: Difference between revisions

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-{{Seed}}
-[[Image:1duk.png|left|200px]]
-<!--
+==WILD-TYPE RECOMBINANT SPERM WHALE METAQUOMYOGLOBIN==
-The line below this paragraph, containing "STRUCTURE_1duk", creates the "Structure Box" on the page.
+<StructureSection load='1duk' size='340' side='right'caption='[[1duk]], [[Resolution|resolution]] 2.13&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1duk]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Physeter_catodon Physeter catodon]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DUK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DUK FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.13&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
-{{STRUCTURE_1duk|  PDB=1duk  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1duk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1duk OCA], [https://pdbe.org/1duk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1duk RCSB], [https://www.ebi.ac.uk/pdbsum/1duk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1duk ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/MYG_PHYMC MYG_PHYMC] Serves as a reserve supply of oxygen and facilitates the movement of oxygen within muscles.
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/du/1duk_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1duk ConSurf].
+<div style="clear:both"></div>
-===WILD-TYPE RECOMBINANT SPERM WHALE METAQUOMYOGLOBIN===
+==See Also==
+*[[Hemoglobin 3D structures|Hemoglobin 3D structures]]
+*[[Myoglobin 3D structures|Myoglobin 3D structures]]
-<!--
+__TOC__
-The line below this paragraph, {{ABSTRACT_PUBMED_10813811}}, adds the Publication Abstract to the page
+</StructureSection>
-(as it appears on PubMed at http://www.pubmed.gov), where 10813811 is the PubMed ID number.
+[[Category: Large Structures]]
--->
-{{ABSTRACT_PUBMED_10813811}}
-==About this Structure==
-DUK is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Physeter_catodon Physeter catodon]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DUK OCA].
-==Reference==
-Trans-substitution of the proximal hydrogen bond in myoglobin: I. Structural consequences of hydrogen bond deletion., Barrick D, Dahlquist FW, Proteins. 2000 Jun 1;39(4):278-90. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/10813811 10813811]
 [[Category: Physeter catodon]]
-[[Category: Single protein]]
+[[Category: Barrick D]]
-[[Category: Barrick, D.]]
+[[Category: Dahlquist FW]]
-[[Category: Dahlquist, F W.]]
-[[Category: Heme protein]]
-[[Category: Myoglobin]]
-[[Category: Oxygen-storage protein]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jun 30 23:38:19 2008''