1eq6: Difference between revisions

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

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-[[Image:1eq6.gif|left|200px]]<br /><applet load="1eq6" size="450" color="white" frame="true" align="right" spinBox="true"
-caption="1eq6, resolution 1.9&Aring;" />
-'''1.9 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF THE SACCHAROMYCES CEREVISIAE RAN-BINDING PROTEIN MOG1P'''<br />
-==Overview==
+==1.9 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF THE SACCHAROMYCES CEREVISIAE RAN-BINDING PROTEIN MOG1P==
-The 1.9 A resolution X-ray crystal structure of Ran-binding protein Mog1p, shows that it has a unique fold based on a six-stranded antiparallel, beta-sheet backed on both sides by an extensive alpha-helix. The topology, of some elements of Mog1p secondary structure resemble a portion of, nuclear transport factor 2 (NTF2), but the hydrophobic cavity and, surrounding negatively charged residues that are important in the, NTF2-RanGDP interaction are not conserved in Mog1p. In addition to binding, RanGTP, Mog1p forms a 1:1 complex with RanGDP and so binds Ran independent, of its nucleotide state. Mog1p and NTF2 compete for binding to RanGDP, indicating that their binding sites on RanGDP are sufficiently close to, prevent both proteins binding simultaneously. Although there may be some, overlap between the Mog1p and NTF2 binding sites on RanGDP, these sites, are not identical. Sequence analysis of Mog1p homologues from, Schizosaccharomyces pombe, human, and Caenorhabditis elegans in the, context of the Mog1p crystal structure indicates the presence of a cluster, of highly conserved surface residues consistent with an interaction site, for Ran.
+<StructureSection load='1eq6' size='340' side='right'caption='[[1eq6]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
+== Structural highlights ==
-==About this Structure==
+<table><tr><td colspan='2'>[[1eq6]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EQ6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1EQ6 FirstGlance]. <br>
-EQ6 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1EQ6 OCA].
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1eq6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1eq6 OCA], [https://pdbe.org/1eq6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1eq6 RCSB], [https://www.ebi.ac.uk/pdbsum/1eq6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1eq6 ProSAT]</span></td></tr>
-==Reference==
+</table>
-.9 A resolution crystal structure of the Saccharomyces cerevisiae Ran-binding protein Mog1p., Stewart M, Baker RP, J Mol Biol. 2000 May 26;299(1):213-23. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=10860733 10860733]
+== Function ==
+[https://www.uniprot.org/uniprot/MOG1_YEAST MOG1_YEAST] Involved in the Ran-GTPase system for nuclear protein import and poly(A)+ mRNA export.<ref>PMID:9860978</ref> <ref>PMID:11509570</ref>
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/eq/1eq6_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1eq6 ConSurf].
+<div style="clear:both"></div>
+== References ==
+<references/>
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
 [[Category: Saccharomyces cerevisiae]]
-[[Category: Single protein]]
+[[Category: Baker RP]]
-[[Category: Baker, R.P.]]
+[[Category: Stewart M]]
-[[Category: Stewart, M.]]
-[[Category: alpha-beta]]
-''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 14:13:19 2007''