1ebh: Difference between revisions

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New page: left|200px<br /><applet load="1ebh" size="450" color="white" frame="true" align="right" spinBox="true" caption="1ebh, resolution 1.9Å" /> '''OCTAHEDRAL COORDINATI...
 
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[[Image:1ebh.jpg|left|200px]]<br /><applet load="1ebh" size="450" color="white" frame="true" align="right" spinBox="true"
caption="1ebh, resolution 1.9&Aring;" />
'''OCTAHEDRAL COORDINATION AT THE HIGH AFFINITY METAL SITE IN ENOLASE; CRYSTALLOGRAPHIC ANALYSIS OF THE MG++-ENZYME FROM YEAST AT 1.9 ANGSTROMS RESOLUTION'''<br />


==Overview==
==OCTAHEDRAL COORDINATION AT THE HIGH AFFINITY METAL SITE IN ENOLASE; CRYSTALLOGRAPHIC ANALYSIS OF THE MG++-ENZYME FROM YEAST AT 1.9 ANGSTROMS RESOLUTION==
The structure of the Mg2+ complex of yeast enolase has been determined, from crystals grown in solutions of poly(ethylene glycol) at pH 8.1., Crystals belong to the space group P2(1) and have unit cell dimensions a =, 72.5 A, b = 73.2 A, c = 89.1 A, and beta = 104.4 degrees. There is one, dimer in the asymmetric unit. The current crystallographic R-factor is, 19.0% for all recorded data to 1.9 A resolution. The electron density, indicates a hexacoordinate Mg2+ at the high-affinity cation binding site., The octahedral coordination sphere consists of a meridional arrangement of, three carboxylate oxygens from the side chains of Asp 246, Asp 320, and, Glu 295, and three well-ordered water molecules. Octahedral coordination, is the preferred geometry for alkaline earth metal ions in complexes with, oxygen donor groups. In previous crystallographic studies of enolase, Zn2+, and Mg2+ complexes at the high-affinity site were reported to exist in, trigonal bipyramidal coordination. This geometry was suggested to enhance, the electrophilicity of the metal ion and promote rapid ligand exchange, [Lebioda, L., &amp; Stec, B. (1989) J. Am. Chem. Soc. 111, 8511-8513]. The, octahedral arrangement of carboxylate and water ligands in the, MgII-enolase complex determined here is most consistent with reports of, the Mn2+ and Mg2+ coordination complexes of mandelate racemase and, muconate lactonizing enzyme. These latter enzymes have alpha/beta-barrel, folds comparable to enolase.(ABSTRACT TRUNCATED AT 250 WORDS)
<StructureSection load='1ebh' size='340' side='right'caption='[[1ebh]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[1ebh]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EBH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1EBH FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ebh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ebh OCA], [https://pdbe.org/1ebh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ebh RCSB], [https://www.ebi.ac.uk/pdbsum/1ebh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ebh ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/ENO1_YEAST ENO1_YEAST]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/eb/1ebh_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ebh ConSurf].
<div style="clear:both"></div>


==About this Structure==
==See Also==
1EBH is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae] with CL and MG as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Phosphopyruvate_hydratase Phosphopyruvate hydratase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.11 4.2.1.11] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1EBH OCA].
*[[Enolase 3D structures|Enolase 3D structures]]
 
__TOC__
==Reference==
</StructureSection>
Octahedral coordination at the high-affinity metal site in enolase: crystallographic analysis of the MgII--enzyme complex from yeast at 1.9 A resolution., Wedekind JE, Reed GH, Rayment I, Biochemistry. 1995 Apr 4;34(13):4325-30. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=7703246 7703246]
[[Category: Large Structures]]
[[Category: Phosphopyruvate hydratase]]
[[Category: Saccharomyces cerevisiae]]
[[Category: Saccharomyces cerevisiae]]
[[Category: Single protein]]
[[Category: Rayment I]]
[[Category: Rayment, I.]]
[[Category: Reed GH]]
[[Category: Reed, G.H.]]
[[Category: Wedekind JE]]
[[Category: Wedekind, J.E.]]
[[Category: CL]]
[[Category: MG]]
[[Category: carbon-oxygen lyase]]
 
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 13:52:39 2007''

Latest revision as of 10:00, 7 February 2024

OCTAHEDRAL COORDINATION AT THE HIGH AFFINITY METAL SITE IN ENOLASE; CRYSTALLOGRAPHIC ANALYSIS OF THE MG++-ENZYME FROM YEAST AT 1.9 ANGSTROMS RESOLUTIONOCTAHEDRAL COORDINATION AT THE HIGH AFFINITY METAL SITE IN ENOLASE; CRYSTALLOGRAPHIC ANALYSIS OF THE MG++-ENZYME FROM YEAST AT 1.9 ANGSTROMS RESOLUTION

Structural highlights

1ebh is a 2 chain structure with sequence from Saccharomyces cerevisiae. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.9Å
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

ENO1_YEAST

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

1ebh, resolution 1.90Å

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