2r8e: Difference between revisions
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New page: '''Unreleased structure''' The entry 2r8e is ON HOLD until Paper Publication Authors: Tsodikov, O.V., Aggarwal, P., Rubin, J.R., Stuckey, J.A., Woodard, R., Biswas, T. Description: Cry... |
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==Crystal structure of YrbI from Escherichia coli in complex with Mg== | |||
<StructureSection load='2r8e' size='340' side='right'caption='[[2r8e]], [[Resolution|resolution]] 1.40Å' scene=''> | |||
== Structural highlights == | |||
<table><tr><td colspan='2'>[[2r8e]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_O6 Escherichia coli O6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R8E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2R8E FirstGlance]. <br> | |||
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.4Å</td></tr> | |||
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2r8e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2r8e OCA], [https://pdbe.org/2r8e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2r8e RCSB], [https://www.ebi.ac.uk/pdbsum/2r8e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2r8e ProSAT]</span></td></tr> | |||
</table> | |||
== Function == | |||
[https://www.uniprot.org/uniprot/KDSC_ECOL6 KDSC_ECOL6] Involved in the biosynthesis of lipopolysaccharides (LPSs) (By similarity). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate. | |||
== Evolutionary Conservation == | |||
[[Image:Consurf_key_small.gif|200px|right]] | |||
Check<jmol> | |||
<jmolCheckbox> | |||
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r8/2r8e_consurf.spt"</scriptWhenChecked> | |||
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | |||
<text>to colour the structure by Evolutionary Conservation</text> | |||
</jmolCheckbox> | |||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2r8e ConSurf]. | |||
<div style="clear:both"></div> | |||
__TOC__ | |||
</StructureSection> | |||
[[Category: Escherichia coli O6]] | |||
[[Category: Large Structures]] | |||
[[Category: Aggarwal P]] | |||
[[Category: Biswas T]] | |||
[[Category: Rubin JR]] | |||
[[Category: Stuckey JA]] | |||
[[Category: Tsodikov OV]] | |||
[[Category: Woodard R]] | |||
Latest revision as of 12:20, 21 February 2024
Crystal structure of YrbI from Escherichia coli in complex with MgCrystal structure of YrbI from Escherichia coli in complex with Mg
Structural highlights
FunctionKDSC_ECOL6 Involved in the biosynthesis of lipopolysaccharides (LPSs) (By similarity). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate. Evolutionary Conservation Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf. |
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