1bam: Difference between revisions

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New page: left|200px<br /><applet load="1bam" size="450" color="white" frame="true" align="right" spinBox="true" caption="1bam, resolution 1.95Å" /> '''STRUCTURE OF RESTRIC...
 
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[[Image:1bam.jpg|left|200px]]<br /><applet load="1bam" size="450" color="white" frame="true" align="right" spinBox="true"
caption="1bam, resolution 1.95&Aring;" />
'''STRUCTURE OF RESTRICTION ENDONUCLEASE BAMHI PHASED AT 1.95 ANGSTROMS RESOLUTION BY MAD ANALYSIS'''<br />


==Overview==
==STRUCTURE OF RESTRICTION ENDONUCLEASE BAMHI PHASED AT 1.95 ANGSTROMS RESOLUTION BY MAD ANALYSIS==
BACKGROUND: Type II restriction endonucleases recognize DNA sequences that, vary between four to eight base pairs, and require only Mg2+ as a cofactor, to catalyze the hydrolysis of DNA. Their protein sequences display a, surprising lack of similarity, and no recurring structural motif analogous, to the helix-turn-helix or the zinc finger of transcription factors, has, yet been discovered. RESULTS: We have determined the crystal structure of, restriction endonuclease BamHI at 1.95 A resolution. The structure was, solved by combining phase information derived from multi-wavelength X-ray, data by algebraic and maximum likelihood methods. The BamHI subunit, consists of a central beta-sheet with alpha-helices on both sides. The, dimer configuration reveals a large cleft which could accommodate B-form, DNA. Mutants of the enzyme that are deficient in cleavage are located at, or near the putative DNA-binding cleft. BamHI and endonuclease EcoRI share, a common core motif (CCM) consisting of five beta-strands and two helices., It remains to be determined if other restriction enzymes also contain the, CCM. CONCLUSIONS: The structure of BamHI provides the first clear evidence, that there may be substantial structural homology amongst restriction, enzymes, even though it is undetectable at the sequence level.
<StructureSection load='1bam' size='340' side='right'caption='[[1bam]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[1bam]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_amyloliquefaciens Bacillus amyloliquefaciens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BAM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1BAM FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95&#8491;</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1bam FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bam OCA], [https://pdbe.org/1bam PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1bam RCSB], [https://www.ebi.ac.uk/pdbsum/1bam PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1bam ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/T2BA_BACAM T2BA_BACAM] Recognizes the double-stranded sequence GGATCC and cleaves after G-1.


==About this Structure==
==See Also==
1BAM is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_amyloliquefaciens Bacillus amyloliquefaciens]. Active as [http://en.wikipedia.org/wiki/Type_II_site-specific_deoxyribonuclease Type II site-specific deoxyribonuclease], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.21.4 3.1.21.4] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1BAM OCA].
*[[BamHI|BamHI]]
 
*[[Endonuclease 3D structures|Endonuclease 3D structures]]
==Reference==
__TOC__
Structure of restriction endonuclease bamhi phased at 1.95 A resolution by MAD analysis., Newman M, Strzelecka T, Dorner LF, Schildkraut I, Aggarwal AK, Structure. 1994 May 15;2(5):439-52. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=8081758 8081758]
</StructureSection>
[[Category: Bacillus amyloliquefaciens]]
[[Category: Bacillus amyloliquefaciens]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Type II site-specific deoxyribonuclease]]
[[Category: Aggarwal AK]]
[[Category: Aggarwal, A.K.]]
[[Category: Newman M]]
[[Category: Newman, M.]]
[[Category: endonuclease]]
 
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 11:30:30 2007''

Latest revision as of 09:34, 7 February 2024

STRUCTURE OF RESTRICTION ENDONUCLEASE BAMHI PHASED AT 1.95 ANGSTROMS RESOLUTION BY MAD ANALYSISSTRUCTURE OF RESTRICTION ENDONUCLEASE BAMHI PHASED AT 1.95 ANGSTROMS RESOLUTION BY MAD ANALYSIS

Structural highlights

1bam is a 1 chain structure with sequence from Bacillus amyloliquefaciens. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.95Å
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

T2BA_BACAM Recognizes the double-stranded sequence GGATCC and cleaves after G-1.

See Also

1bam, resolution 1.95Å

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