2pt5: Difference between revisions

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==Crystal Structure Of Shikimate Kinase (aq_2177) From Aquifex Aeolicus vf5==
The line below this paragraph, containing "STRUCTURE_2pt5", creates the "Structure Box" on the page.
<StructureSection load='2pt5' size='340' side='right'caption='[[2pt5]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)  
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2pt5]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Aquifex_aeolicus_VF5 Aquifex aeolicus VF5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PT5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PT5 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>
{{STRUCTURE_2pt5| PDB=2pt5 |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pt5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pt5 OCA], [https://pdbe.org/2pt5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pt5 RCSB], [https://www.ebi.ac.uk/pdbsum/2pt5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pt5 ProSAT], [https://www.topsan.org/Proteins/RSGI/2pt5 TOPSAN]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/AROK_AQUAE AROK_AQUAE] Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate (By similarity).
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pt/2pt5_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pt5 ConSurf].
<div style="clear:both"></div>


'''Crystal Structure Of Shikimate Kinase (aq_2177) From Aquifex Aeolicus vf5'''
==See Also==
 
*[[Shikimate kinase 3D structures|Shikimate kinase 3D structures]]
 
__TOC__
==About this Structure==
</StructureSection>
2PT5 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PT5 OCA].
[[Category: Aquifex aeolicus VF5]]
[[Category: Aquifex aeolicus]]
[[Category: Large Structures]]
[[Category: Shikimate kinase]]
[[Category: Ebihara A]]
[[Category: Single protein]]
[[Category: Jeyakanthan J]]
[[Category: Ebihara, A.]]
[[Category: Kuramitsu S]]
[[Category: Jeyakanthan, J.]]
[[Category: Nithya N]]
[[Category: Kuramitsu, S.]]
[[Category: Shimada A]]
[[Category: Nithya, N.]]
[[Category: Shinkai A]]
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
[[Category: Shiro Y]]
[[Category: Shimada, A.]]
[[Category: Velmurugan D]]
[[Category: Shinkai, A.]]
[[Category: Yokoyama S]]
[[Category: Shiro, Y.]]
[[Category: Velmurugan, D.]]
[[Category: Yokoyama, S.]]
[[Category: Amino-acid biosynthesis]]
[[Category: Aromatic amino acid biosynthesis]]
[[Category: Atp-binding]]
[[Category: Cytoplasm]]
[[Category: Kinase]]
[[Category: Magnesium]]
[[Category: Metal-binding]]
[[Category: National project on protein structural and functional analyse]]
[[Category: Nppsfa]]
[[Category: Nucleotide-binding]]
[[Category: P-loop kinase]]
[[Category: Riken structural genomics/proteomics initiative]]
[[Category: Rsgi]]
[[Category: Shikimate kinase]]
[[Category: Shikimate pathway]]
[[Category: Structural genomic]]
[[Category: Transferase]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed May 14 11:21:04 2008''

Latest revision as of 11:30, 30 October 2024

Crystal Structure Of Shikimate Kinase (aq_2177) From Aquifex Aeolicus vf5Crystal Structure Of Shikimate Kinase (aq_2177) From Aquifex Aeolicus vf5

Structural highlights

2pt5 is a 4 chain structure with sequence from Aquifex aeolicus VF5. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.1Å
Ligands:, ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

AROK_AQUAE Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate (By similarity).

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

2pt5, resolution 2.10Å

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