2r8d: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-[[Image:2r8d.jpg|left|200px]]
-<!--
+==The structure of transporter associated domain CorC_HlyC from a Xylella fastidiosa Temecula1 hemolysin in complex with Mg++ and Mn++==
-The line below this paragraph, containing "STRUCTURE_2r8d", creates the "Structure Box" on the page.
+<StructureSection load='2r8d' size='340' side='right'caption='[[2r8d]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[2r8d]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Xylft Xylft]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R8D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2R8D FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
--->
+<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MLY:N-DIMETHYL-LYSINE'>MLY</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-{{STRUCTURE_2r8d|  PDB=2r8d  |  SCENE=  }}
+<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2oai|2oai]]</div></td></tr>
+<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">tlyC ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=183190 XYLFT])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2r8d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2r8d OCA], [https://pdbe.org/2r8d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2r8d RCSB], [https://www.ebi.ac.uk/pdbsum/2r8d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2r8d ProSAT], [https://www.topsan.org/Proteins/MCSG/2r8d TOPSAN]</span></td></tr>
+</table>
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r8/2r8d_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2r8d ConSurf].
+<div style="clear:both"></div>
-'''The structure of transporter associated domain CorC_HlyC from a Xylella fastidiosa Temecula1 hemolysin in complex with Mg++ and Mn++'''
+==See Also==
+*[[Hemolysin 3D structures|Hemolysin 3D structures]]
+__TOC__
-==About this Structure==
+</StructureSection>
-R8D is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Xylella_fastidiosa_temecula1 Xylella fastidiosa temecula1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R8D OCA].
+[[Category: Large Structures]]
-[[Category: Single protein]]
+[[Category: Xylft]]
-[[Category: Xylella fastidiosa temecula1]]
+[[Category: Cuff, M E]]
-[[Category: Cuff, M E.]]
+[[Category: Joachimiak, A]]
-[[Category: Joachimiak, A.]]
+[[Category: Structural genomic]]
-[[Category: MCSG, Midwest Center for Structural Genomics.]]
+[[Category: Volkart, L]]
-[[Category: Volkart, L.]]
 [[Category: Corc]]
 [[Category: Hemolysin]]
 [[Category: Mcsg]]
-[[Category: Midwest center for structural genomic]]
 [[Category: Pfam03471]]
-[[Category: Protein structure initiative]]
+[[Category: PSI, Protein structure initiative]]
-[[Category: Psi-2]]
-[[Category: Structural genomic]]
 [[Category: Toxin]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May  4 16:25:15 2008''