2dc0: Difference between revisions

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[[Image:2dc0.jpg|left|200px]]


<!--
==Crystal structure of amidase==
The line below this paragraph, containing "STRUCTURE_2dc0", creates the "Structure Box" on the page.
<StructureSection load='2dc0' size='340' side='right'caption='[[2dc0]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2dc0]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DC0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DC0 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
{{STRUCTURE_2dc0|  PDB=2dc0 |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dc0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dc0 OCA], [https://pdbe.org/2dc0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dc0 RCSB], [https://www.ebi.ac.uk/pdbsum/2dc0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dc0 ProSAT], [https://www.topsan.org/Proteins/RSGI/2dc0 TOPSAN]</span></td></tr>
 
</table>
'''Crystal structure of amidase'''
== Function ==
 
[https://www.uniprot.org/uniprot/Q5SHD3_THET8 Q5SHD3_THET8]
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
2DC0 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DC0 OCA].  
Check<jmol>
[[Category: Single protein]]
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dc/2dc0_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dc0 ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Thermus thermophilus]]
[[Category: Thermus thermophilus]]
[[Category: Ebihara, A.]]
[[Category: Ebihara A]]
[[Category: Kanagawa, M.]]
[[Category: Kanagawa M]]
[[Category: Kuramitsu, S.]]
[[Category: Kuramitsu S]]
[[Category: Kuroishi, C.]]
[[Category: Kuroishi C]]
[[Category: Nakagawa, N.]]
[[Category: Nakagawa N]]
[[Category: Ohshima, T.]]
[[Category: Ohshima T]]
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
[[Category: Sakuraba H]]
[[Category: Sakuraba, H.]]
[[Category: Satoh S]]
[[Category: Satoh, S.]]
[[Category: Yokoyama S]]
[[Category: Yokoyama, S.]]
[[Category: Amidase]]
[[Category: National project on protein structural and functional analyse]]
[[Category: Nppsfa]]
[[Category: Riken structural genomics/proteomics initiative]]
[[Category: Rsgi]]
[[Category: Structural genomic]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May  4 00:08:24 2008''

Latest revision as of 10:55, 30 October 2024

Crystal structure of amidaseCrystal structure of amidase

Structural highlights

2dc0 is a 2 chain structure with sequence from Thermus thermophilus. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

Q5SHD3_THET8

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

2dc0, resolution 2.00Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
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