8zbe: Difference between revisions

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-'''Unreleased structure'''
-The entry 8zbe is ON HOLD  until Paper Publication
+==cryo-EM structure of the octreotide-bound SSTR5-Gi complex==
+<StructureSection load='8zbe' size='340' side='right'caption='[[8zbe]], [[Resolution|resolution]] 3.24&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[8zbe]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens], [https://en.wikipedia.org/wiki/Oplophorus_gracilirostris Oplophorus gracilirostris], [https://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8ZBE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8ZBE FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 3.24&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DPN:D-PHENYLALANINE'>DPN</scene>, <scene name='pdbligand=DTR:D-TRYPTOPHAN'>DTR</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8zbe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8zbe OCA], [https://pdbe.org/8zbe PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8zbe RCSB], [https://www.ebi.ac.uk/pdbsum/8zbe PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8zbe ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/SSR5_HUMAN SSR5_HUMAN] Receptor for somatostatin 28 and to a lesser extent for somatostatin-14. The activity of this receptor is mediated by G proteins which inhibit adenylyl cyclase. Increases cell growth inhibition activity of SSTR2 following heterodimerization.<ref>PMID:12072395</ref> <ref>PMID:7908405</ref> <ref>PMID:8078491</ref> <ref>PMID:8373420</ref> [https://www.uniprot.org/uniprot/ADRB2_HUMAN ADRB2_HUMAN] Beta-adrenergic receptors mediate the catecholamine-induced activation of adenylate cyclase through the action of G proteins. The beta-2-adrenergic receptor binds epinephrine with an approximately 30-fold greater affinity than it does norepinephrine.
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+Somatostatin receptor 5 (SSTR5) is highly expressed in ACTH-secreting pituitary adenomas and is an important drug target for the treatment of Cushing's disease. Two cyclic SST analog peptides (pasireotide and octreotide) both can activate SSTR5 and SSTR2. Pasireotide is preferential binding to SSTR5 than octreotide, while octreotide is biased to SSTR2 than SSTR5. The lack of selectivity of both pasireotide and octreotide causes side effects, such as hyperglycemia, gastrointestinal disturbance, and abnormal glucose homeostasis. However, little is known about the binding and selectivity mechanisms of pasireotide and octreotide with SSTR5, limiting the development of subtype-selective SST analog drugs specifically targeting SSTR5. Here, we report two cryo-electron microscopy (cryo-EM) structures of SSTR5-Gi complexes activated by pasireotide and octreoitde at resolutions of 3.09 A and 3.24 A, respectively. In combination with structural analysis and functional experiments, our results reveal the molecular mechanisms of ligand recognition and receptor activation. We also demonstrate that pasireotide preferentially binds to SSTR5 through the interactions between Tyr(Bzl)/(D)Trp of pasireotide and SSTR5. Moreover, we find that the Q(2.63), N(6.55), F(7.35) and ECL2 of SSTR2 play a crucial role in octreotide biased binding of SSTR2. Our results will provide structural insights and offer new opportunities for the drug discovery of better selective pharmaceuticals targeting specific SSTR subtypes.
-Authors: Li, Y.G., Meng, X.Y., Yang, X.R., Ling, S.L., Shi, P., Tian, C.L., Yang, F.
+Structural insights into somatostatin receptor 5 bound with cyclic peptides.,Li YG, Meng XY, Yang X, Ling SL, Shi P, Tian CL, Yang F Acta Pharmacol Sin. 2024 Jun 26. doi: 10.1038/s41401-024-01314-8. PMID:38926478<ref>PMID:38926478</ref>
-Description: cryo-EM structure of the octreoitde-bound SSTR5-Gi complex
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-[[Category: Unreleased Structures]]
+</div>
-[[Category: Shi, P]]
+<div class="pdbe-citations 8zbe" style="background-color:#fffaf0;"></div>
-[[Category: Ling, S.L]]
+== References ==
-[[Category: Li, Y.G]]
+<references/>
-[[Category: Tian, C.L]]
+__TOC__
-[[Category: Yang, F]]
+</StructureSection>
-[[Category: Yang, X.R]]
+[[Category: Homo sapiens]]
-[[Category: Meng, X.Y]]
+[[Category: Large Structures]]
+[[Category: Oplophorus gracilirostris]]
+[[Category: Rattus norvegicus]]
+[[Category: Synthetic construct]]
+[[Category: Li YG]]
+[[Category: Ling SL]]
+[[Category: Meng XY]]
+[[Category: Shi P]]
+[[Category: Tian CL]]
+[[Category: Yang F]]
+[[Category: Yang XR]]