1shf: Difference between revisions

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-[[Image:1shf.gif|left|200px]]<br />
-<applet load="1shf" size="450" color="white" frame="true" align="right" spinBox="true"
-caption="1shf, resolution 1.9&Aring;" />
-'''CRYSTAL STRUCTURE OF THE SH3 DOMAIN IN HUMAN FYN; COMPARISON OF THE THREE-DIMENSIONAL STRUCTURES OF SH3 DOMAINS IN TYROSINE KINASES AND SPECTRIN'''<br />
-==Overview==
+==CRYSTAL STRUCTURE OF THE SH3 DOMAIN IN HUMAN FYN; COMPARISON OF THE THREE-DIMENSIONAL STRUCTURES OF SH3 DOMAINS IN TYROSINE KINASES AND SPECTRIN==
-The Src-homology 3 (SH3) region is a protein domain consisting of, approximately 60 residues. It occurs in a large number of eukaryotic, proteins involved in signal transduction, cell polarization and, membrane--cytoskeleton interactions. The function is unknown, but it is, probably involved in specific protein--protein interactions. Here we, report the crystal structure of the SH3 domain of Fyn (a Src family, tyrosine kinase) at 1.9 A resolution. The crystals have two SH3 molecules, per asymmetric unit. These two Fyn SH3 domains are not related by a local, twofold axis. The crystal structures of spectrin and Fyn SH3 domains as, well as the solution structure of the Src SH3 domain show that these all, have the same basic fold. A protein domain which has the same topology as, SH3 is present in the prokaryotic regulatory enzyme BirA. The comparison, between the crystal structures of Fyn and spectrin SH3 domains shows that, a conserved surface patch, consisting mainly of aromatic residues, is, flanked by two hairpin-like loops (residues 94-104 and 114-118 in Fyn)., These loops are different in tyrosine kinase and spectrin SH3 domains., They could modulate the binding properties of the aromatic surface.
+<StructureSection load='1shf' size='340' side='right'caption='[[1shf]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[1shf]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SHF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1SHF FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1shf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1shf OCA], [https://pdbe.org/1shf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1shf RCSB], [https://www.ebi.ac.uk/pdbsum/1shf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1shf ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/FYN_HUMAN FYN_HUMAN] Non-receptor tyrosine-protein kinase that plays a role in many biological processes including regulation of cell growth and survival, cell adhesion, integrin-mediated signaling, cytoskeletal remodeling, cell motility, immune response and axon guidance. Inactive FYN is phosphorylated on its C-terminal tail within the catalytic domain. Following activation by PKA, the protein subsequently associates with PTK2/FAK1, allowing PTK2/FAK1 phosphorylation, activation and targeting to focal adhesions. Involved in the regulation of cell adhesion and motility through phosphorylation of CTNNB1 (beta-catenin) and CTNND1 (delta-catenin). Regulates cytoskeletal remodeling by phosphorylating several proteins including the actin regulator WAS and the microtubule-associated proteins MAP2 and MAPT. Promotes cell survival by phosphorylating AGAP2/PIKE-A and preventing its apoptotic cleavage. Participates in signal transduction pathways that regulate the integrity of the glomerular slit diaphragm (an essential part of the glomerular filter of the kidney) by phosphorylating several slit diaphragm components including NPHS1, KIRREL and TRPC6. Plays a role in neural processes by phosphorylating DPYSL2, a multifunctional adapter protein within the central nervous system, ARHGAP32, a regulator for Rho family GTPases implicated in various neural functions, and SNCA, a small pre-synaptic protein. Participates in the downstream signaling pathways that lead to T-cell differentiation and proliferation following T-cell receptor (TCR) stimulation. Also participates in negative feedback regulation of TCR signaling through phosphorylation of PAG1, thereby promoting interaction between PAG1 and CSK and recruitment of CSK to lipid rafts. CSK maintains LCK and FYN in an inactive form. Promotes CD28-induced phosphorylation of VAV1.<ref>PMID:7822789</ref> <ref>PMID:7568038</ref> <ref>PMID:11005864</ref> <ref>PMID:11162638</ref> <ref>PMID:11536198</ref> <ref>PMID:12788081</ref> <ref>PMID:12640114</ref> <ref>PMID:14761972</ref> <ref>PMID:15557120</ref> <ref>PMID:14707117</ref> <ref>PMID:15536091</ref> <ref>PMID:16387660</ref> <ref>PMID:16841086</ref> <ref>PMID:17194753</ref> <ref>PMID:18056706</ref> <ref>PMID:18258597</ref> <ref>PMID:19179337</ref> <ref>PMID:19652227</ref> <ref>PMID:20100835</ref>
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/sh/1shf_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1shf ConSurf].
+<div style="clear:both"></div>
-==About this Structure==
+==See Also==
-SHF is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Active as [http://en.wikipedia.org/wiki/Transferase Transferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.10.1 and 2.7.10.2 2.7.10.1 and 2.7.10.2] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1SHF OCA].
+*[[Tyrosine kinase 3D structures|Tyrosine kinase 3D structures]]
+== References ==
-==Reference==
+<references/>
-Crystal structure of the SH3 domain in human Fyn; comparison of the three-dimensional structures of SH3 domains in tyrosine kinases and spectrin., Noble ME, Musacchio A, Saraste M, Courtneidge SA, Wierenga RK, EMBO J. 1993 Jul;12(7):2617-24. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=7687536 7687536]
+__TOC__
+</StructureSection>
 [[Category: Homo sapiens]]
-[[Category: Single protein]]
+[[Category: Large Structures]]
-[[Category: Transferase]]
+[[Category: Musacchio A]]
-[[Category: Musacchio, A.]]
+[[Category: Noble M]]
-[[Category: Noble, M.]]
+[[Category: Saraste M]]
-[[Category: Saraste, M.]]
+[[Category: Wierenga R]]
-[[Category: Wierenga, R.]]
-[[Category: phosphotransferase]]
-''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Mon Nov 12 19:13:39 2007''