1pdp: Difference between revisions

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[[Image:1pdp.jpg|left|200px]]


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==Fitting of gp9 structure into the bacteriophage T4 baseplate cryoEM reconstruction==
The line below this paragraph, containing "STRUCTURE_1pdp", creates the "Structure Box" on the page.
<SX load='1pdp' size='340' side='right' viewer='molstar' caption='[[1pdp]], [[Resolution|resolution]] 12.00&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1pdp]] is a 18 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_T4 Escherichia virus T4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PDP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1PDP FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 12&#8491;</td></tr>
-->
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1pdp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pdp OCA], [https://pdbe.org/1pdp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1pdp RCSB], [https://www.ebi.ac.uk/pdbsum/1pdp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1pdp ProSAT]</span></td></tr>
{{STRUCTURE_1pdp|  PDB=1pdp  |  SCENE= }}
</table>
 
== Function ==
'''Fitting of gp9 structure into the bacteriophage T4 baseplate cryoEM reconstruction'''
[https://www.uniprot.org/uniprot/BP09_BPT4 BP09_BPT4] Baseplate protein that connects the long tail fibers to the baseplate and probably triggers the tail contraction after virus attachment to a host cell (PubMed:10545330). Involved in the tail assembly (PubMed:21129200).<ref>PMID:10545330</ref> <ref>PMID:21129200</ref>
 
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
==Overview==
Check<jmol>
The baseplate of bacteriophage T4 is a multiprotein molecular machine that controls host cell recognition, attachment, tail sheath contraction and viral DNA ejection. We report here the three-dimensional structure of the baseplate-tail tube complex determined to a resolution of 12 A by cryoelectron microscopy. The baseplate has a six-fold symmetric, dome-like structure approximately 520 A in diameter and approximately 270 A long, assembled around a central hub. A 940 A-long and 96 A-diameter tail tube, coaxial with the hub, is connected to the top of the baseplate. At the center of the dome is a needle-like structure that was previously identified as a cell puncturing device. We have identified the locations of six proteins with known atomic structures, and established the position and shape of several other baseplate proteins. The baseplate structure suggests a mechanism of baseplate triggering and structural transition during the initial stages of T4 infection.
  <jmolCheckbox>
 
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pd/1pdp_consurf.spt"</scriptWhenChecked>
==About this Structure==
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
1PDP is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_t4 Enterobacteria phage t4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1PDP OCA].  
    <text>to colour the structure by Evolutionary Conservation</text>
 
  </jmolCheckbox>
==Reference==
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1pdp ConSurf].
Three-dimensional structure of bacteriophage T4 baseplate., Kostyuchenko VA, Leiman PG, Chipman PR, Kanamaru S, van Raaij MJ, Arisaka F, Mesyanzhinov VV, Rossmann MG, Nat Struct Biol. 2003 Sep;10(9):688-93. Epub 2003 Aug 17. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12923574 12923574]
<div style="clear:both"></div>
[[Category: Enterobacteria phage t4]]
== References ==
[[Category: Single protein]]
<references/>
[[Category: Arisaka, F.]]
__TOC__
[[Category: Chipman, P R.]]
</SX>
[[Category: Kanamaru, S.]]
[[Category: Escherichia virus T4]]
[[Category: Kostyuchenko, V A.]]
[[Category: Large Structures]]
[[Category: Leiman, P G.]]
[[Category: Arisaka F]]
[[Category: Mesyanzhinov, V V.]]
[[Category: Chipman PR]]
[[Category: Raaij, M J.van.]]
[[Category: Kanamaru S]]
[[Category: Rossmann, M G.]]
[[Category: Kostyuchenko VA]]
[[Category: Structural protein]]
[[Category: Leiman PG]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May  3 04:58:19 2008''
[[Category: Mesyanzhinov VV]]
[[Category: Rossmann MG]]
[[Category: Van Raaij MJ]]

Latest revision as of 11:07, 14 February 2024

Fitting of gp9 structure into the bacteriophage T4 baseplate cryoEM reconstructionFitting of gp9 structure into the bacteriophage T4 baseplate cryoEM reconstruction

1pdp, resolution 12.00Å

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