Structure superposition tools: Difference between revisions
Eric Martz (talk | contribs) |
some details abot FATCAT output |
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*Visualization: YES. | *Visualization: YES. | ||
*Color by deviation: '''NO'''. (Colors identify twist/hinge boundaries.) | *Color by deviation: '''NO'''. (Colors identify twist/hinge boundaries.) | ||
*Offered by RCSB? YES | *Offered by RCSB? YES, with both options: rigid and flexible. | ||
*Download result: one pdb file, not using MODEL/ENDMDL delimiters but with the aligned structures labeled as chains A and B. If done at RCSB, download has 2 separate mmCIF files. | |||
*Special features: | *Special features: | ||
**Produces a [[morph]] between the two superposed chains (at the link "Interpolating between ..."). | **Produces a [[morph]] between the two superposed chains (at the link "Interpolating between ..."). It is a 10-model PDB file '''with only alpha carbons'''. | ||
**Offers a RasMol script to color each rigid segment distinctly (separated by twists/hinges). | **Offers a RasMol script to color each rigid segment distinctly (separated by twists/hinges). | ||
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===DeepView = Swiss-PDBViewer=== | ===DeepView = Swiss-PDBViewer=== | ||
*Download site: [http://www.expasy.org/spdbv/ DeepView Swiss-PdbViewer]. | *Download site: [http://www.expasy.org/spdbv/ DeepView Swiss-PdbViewer]. | ||
*[https://spdbv.unil.ch/superpos_tut.html Tutorial on superposition using DeepView]. | |||
*Publications (1997, 1999)<ref>PMID: 9504803</ref><ref>PMID: 10470037</ref> | *Publications (1997, 1999)<ref>PMID: 9504803</ref><ref>PMID: 10470037</ref> | ||
*Version 4.11 released in 2019; works on Windows and macOS 10.5-10.14. | *Version 4.11 released in 2019; works on Windows and macOS 10.5-10.14. | ||