1j2y: Difference between revisions

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-[[Image:1j2y.jpg|left|200px]]
-<!--
+==Crystal structure of the type II 3-dehydroquinase==
-The line below this paragraph, containing "STRUCTURE_1j2y", creates the "Structure Box" on the page.
+<StructureSection load='1j2y' size='340' side='right'caption='[[1j2y]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1j2y]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Helicobacter_pylori Helicobacter pylori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J2Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1J2Y FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DQA:1,3,4-TRIHYDROXY-5-OXO-CYCLOHEXANECARBOXYLIC+ACID'>DQA</scene></td></tr>
-{{STRUCTURE_1j2y|  PDB=1j2y  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1j2y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1j2y OCA], [https://pdbe.org/1j2y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1j2y RCSB], [https://www.ebi.ac.uk/pdbsum/1j2y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1j2y ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/AROQ_HELPY AROQ_HELPY] Catalyzes a trans-dehydration via an enolate intermediate (By similarity).[HAMAP-Rule:MF_00169]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/j2/1j2y_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1j2y ConSurf].
+<div style="clear:both"></div>
-'''Crystal structure of the type II 3-dehydroquinase'''
+==See Also==
+*[[Dehydroquinase 3D structures|Dehydroquinase 3D structures]]
+__TOC__
-==About this Structure==
+</StructureSection>
-J2Y is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Helicobacter_pylori Helicobacter pylori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J2Y OCA].
-==Reference==
-Crystal structure of the type II 3-dehydroquinase from Helicobacter pylori., Lee BI, Kwak JE, Suh SW, Proteins. 2003 Jun 1;51(4):616-7. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12784220 12784220]
-[[Category: 3-dehydroquinate dehydratase]]
 [[Category: Helicobacter pylori]]
-[[Category: Single protein]]
+[[Category: Large Structures]]
-[[Category: Kwak, J E.]]
+[[Category: Kwak JE]]
-[[Category: Lee, B I.]]
+[[Category: Lee BI]]
-[[Category: Suh, S W.]]
+[[Category: Suh SW]]
-[[Category: 3-dehydroquinase]]
-[[Category: Lyase]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri May  2 20:44:26 2008''